Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4261 ATGGAAAAAAAGATTGGTTATAGTGATGCAAACAGAAAATACTATGGAAGTGCTCTATGTTGGTGGTTAACAGTTTCAGTTGTAGCAATCCTTGTAGTAGCTGCTGGTGTTTTTACTATATTCATCAACTTTCATCGTCTTTCTCATTCACCTCAACCCTCCAACATCGTTCCAAAATATGCTTCCTCTTTTCAGTTAGCCCTCCAATTTTTCGACGTCCAAAAATCTGGTAAGCTGAAGAATAATAGGGTTTGGTGGAGAGGGGATTCAGGGCTAAGAGATGGTAGCGAGGAAAATTTGGATTTGTCGAAAGGATTGTATGATGCTGGTGATCTTGTGAAATTTGGGTTTCCAATGGCTTTCACTGCTACTGTATTGTCTTGGGCTATTCTTGAATATGGACATAACATGGATGCAGTTAAGCAGCTAGATTATGCAGTAGACTCACTTAAGTGGATCACTGATTATCTTGTTAATGCACATCCTTTTGCTGAGGTGCTTTATATTCAGGTAGGGGATCCTGAGGTAGACCACAATTGCTGGGAAAGGCCCGAAAACATGACCGAAAAAAGGCCACTCACTCAAGTTAACTCATCTTACCCAGGAACAGAAGTTGCAGCAGAAACCGCAGCGGCGTTAGCCTCAGCATCTCTAGTTTTTAAGGAGATTAATCTCACTTACTCTCAGATTCTCCTTGAACATGCTCAGCAACTGTTTATTTTTGCTGATACATACAAAGTTTCTTACAGTGTTAGTATTCCACAAGTTGGAAAATACTATAACTCATCTGGTTATGAGGATGAACTTTTATGGGCAAGTACCTGGCTCTATCATGCAACAAAGGATCCATCATATCTAAATTATGTGACAGAGAAAAATAAGAATGAATTTGGCAGTTTAGGAAGTGGTTCTTGGTTTAGTTGGGATGATAAGCATGCTGCAACTCAGGTCCTTTTGTCAAGACTAAATTTCTTTGGTGCTGGAGATGTTCCAGATACAGAGAACCTTGACCTTCAGAAGTACAGAGAAACTGCTGAAATACTCATGTGCAAGTTTCTACCAGATTCACCAACAGCCACAACCAACAGAACCAAAAGTGGACTGATTTGGGTGGTACCATGGAATTCTTTGCAACATTCAGTTGCTTCTGCATTCTTAGCTGTTATTTATAGTGATTACATGTTCACATCTCAAACCGAAAATCTATATTGTAGTGGGAAAATGTATAAGCCAGTAGATCTCCGTAAATTCGCCATTTCTCAGGTAGATTATGTGTTGGGAGAAAATCCAATGAATATGAGTTTTCTTGTGGGACACGGAAGTGAATACCCTAAATACATACATCATAGAGGATCTTCAATTCCAGTTGATGCTAAAACTGGCTGTAGGGATGGATTCAAGTGGTATGACTCACCTGACCCTAATCCTAATGTGGCATTTGGAGCTATAGTGGGTGGCCCCTTTTTCAATGAGACATATAATGATTTCAGGAATAACTCAATGCAAGCTGAACCAACCACTTATAGTAATGCACTTTTAGTTGGTCTCCTCTCTGGCTTGGTTGCTAGTTCCTCTGTAGTTTCCTCTTTCTAG 1593 0.3986 MEKKIGYSDANRKYYGSALCWWLTVSVVAILVVAAGVFTIFINFHRLSHSPQPSNIVPKYASSFQLALQFFDVQKSGKLKNNRVWWRGDSGLRDGSEENLDLSKGLYDAGDLVKFGFPMAFTATVLSWAILEYGHNMDAVKQLDYAVDSLKWITDYLVNAHPFAEVLYIQVGDPEVDHNCWERPENMTEKRPLTQVNSSYPGTEVAAETAAALASASLVFKEINLTYSQILLEHAQQLFIFADTYKVSYSVSIPQVGKYYNSSGYEDELLWASTWLYHATKDPSYLNYVTEKNKNEFGSLGSGSWFSWDDKHAATQVLLSRLNFFGAGDVPDTENLDLQKYRETAEILMCKFLPDSPTATTNRTKSGLIWVVPWNSLQHSVASAFLAVIYSDYMFTSQTENLYCSGKMYKPVDLRKFAISQVDYVLGENPMNMSFLVGHGSEYPKYIHHRGSSIPVDAKTGCRDGFKWYDSPDPNPNVAFGAIVGGPFFNETYNDFRNNSMQAEPTTYSNALLVGLLSGLVASSSVVSSF* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4261 530 Pfam Glycosyl hydrolase family 9 60 517 IPR001701 GO:0004553|GO:0005975
Tpr4g4261 530 PANTHER ENDO-1,4-BETA-GLUCANASE 17 530 - -
Tpr4g4261 530 PANTHER ENDOGLUCANASE 2 17 530 - -
Tpr4g4261 530 Gene3D - 58 524 IPR012341 GO:0005975
Tpr4g4261 530 SUPERFAMILY Six-hairpin glycosidases 60 523 IPR008928 GO:0005975
Tpr4g4261 530 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 424 450 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4261 Tpr-Chr4 49766583 49770376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4261 20 530 Glycoside Hydrolase AT1G75680 61.776 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4261 - K01179 gmx:100782202 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4261 4 49766583 49770376 Tpr4g4261 4 49766583 49770376 ECH