Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4219 ATGAAATATTCACGCTTTCTACAATTTTCACGTCTCCGAAAAACCCTAATTCAAAACCCTAATTTCCCTTCTCCTCAAATTTCAAAACCCTACATCACCACACCAAATCAACACCAATGCAAATTCACCTCAATACGCAATTTCAACACCGCATCGCAAGATTCCGAAAAGGTATCCGCGATCGTGGATGAACTTACCGGATTAACGCTTTTGGAAGTAATGGACCTTGTTGATTTGATGCGAGAGAAAAAAGGAATCAATGAGCTTCCGATTATGATGTTGATGGTTCCTGGAATGGGAATCAGAGGAATACCGAGGGGTGTGGGTGGAGCGAAAGGGGGTGGTGGTGAAAAAGGAGCGGAAGAGAAGAAGGTTGAGAAAACGGCGTTTGATGTTAAGCTTGATGGTTTTGATGCGGCGGCGAAGATTAAGATTATTAAGGAAGTTAGGACTTTTACTAGTTTGGGTTTGAAGGAAGCTAAGGATTTGGTGGAGAAAGCTCCTACTCTTTTGAAGAAAGGTGTGACGAAGGAAGAGGCGGAGAGTATTATTGCTAAATTGAAGGAGGTTGGAGCAAAAGCTTCTATGGAATAA 594 0.4226 MKYSRFLQFSRLRKTLIQNPNFPSPQISKPYITTPNQHQCKFTSIRNFNTASQDSEKVSAIVDELTGLTLLEVMDLVDLMREKKGINELPIMMLMVPGMGIRGIPRGVGGAKGGGGEKGAEEKKVEKTAFDVKLDGFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKAPTLLKKGVTKEEAESIIAKLKEVGAKASME* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4219 197 Hamap 50S ribosomal protein L7/L12 [rplL]. 55 197 IPR000206 GO:0003735|GO:0005840|GO:0006412
Tpr4g4219 197 SUPERFAMILY Ribosomal protein L7/12, oligomerisation (N-terminal) domain 57 131 IPR036235 GO:0003735|GO:0005840|GO:0006412
Tpr4g4219 197 Gene3D - 127 196 IPR014719 -
Tpr4g4219 197 Gene3D Single helix bin 57 126 IPR036235 GO:0003735|GO:0005840|GO:0006412
Tpr4g4219 197 SUPERFAMILY ClpS-like 126 196 IPR014719 -
Tpr4g4219 197 PANTHER 39S RIBOSOMAL PROTEIN L12 35 197 IPR000206 GO:0003735|GO:0005840|GO:0006412
Tpr4g4219 197 CDD Ribosomal_L7_L12 56 196 IPR000206 GO:0003735|GO:0005840|GO:0006412
Tpr4g4219 197 Pfam Ribosomal protein L7/L12 dimerisation domain 57 95 IPR008932 GO:0003735|GO:0005840|GO:0006412
Tpr4g4219 197 Pfam Ribosomal protein L7/L12 C-terminal domain 130 196 IPR013823 GO:0003735|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4219 Tpr-Chr4 49276693 49278383 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4219 K02935 - gmx:100775592 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4219 4 49276693 49278383 Tpr4g4219 4 49276693 49278383 ECH