LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr4g4189	ATGAAGAACCTCACTTTACTTGCAGCTTCAACTTCAACGCAACAATTCCTCTTTCAAATTCATAACTCTTTCTTTGCCGTTGGATTCACCACCCGAACCACCTTCCTTCCTAACCGAACCACCGAATTAACGCCGCATATTTGTTGCCGAACCAAACAATGTCGCTCCAAAGCATTTTCAACCAAACAAGAGCTTCTTGCAGCACTTCAGAAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTTATTCGGACGATGACACATCCTTCTTATCCCTCAGCATGAAGCCGGACCGGAGTTTGGGCTTGCTTGATGATTATGAGACAGAGGAACTCGATTTTGATCCTAACCACCGAAGTGGATATGTGGCTTTACTTGGCATGCCAAATGTTGGGAAAAGTACACTGGCAAACCAAATGGTTGGCCAGAGGTTGTCAATAGTTACAGATAAACCTCAAACGACAAGGCATCGAGTTCTTTGTATATGTTCTGGCTCCGATTATCAGATGATACTTTATGATACTCCCGGTGTTCTACAAGAGCAAAGGCACAAGTTGGACTCGATGATGATGCAAAATGTTCGCAGTGCTGCAGTTAACGCTGACTGTGTATTGATTCTCGTAGATGCATGTAAAGCGCCTGAAAAAATTGATGAAGTGTTAGAAGGCATGGGAGACCACAAAGATAAAGTCCCCACCCTATTGATTATGAACAAGAAGGATCTTATCAAACCTGGTGAAGTTGCAAAGAAACTCGAGTGGTATACAAAATTTACTGATGTTGACGAGGTTATACCAGTTAGTGCCAAGTATGGTCATGGGGTTGAAGATGTCAAGAACTGGATACTATCGAAGCTTCCTAATGGACCAGCTTATTTTCCAAAGGACATTATCAGTGAGCATCCAGAAAGATTTTTTGTAGGTGAAATTATTAGAGAAAAGATTTTTTTGCAGTATCGAAAGGAAATCCCCTATGTGTGTCAGGTGAATGTTTTAAGCTATAAGGCTCGACCAAATGCAAAAGATTTTATACAGGTGCAGATTTTGGTTGAGAAAAACTCGCAGAAAATCGTCGTTATTGGAAAAAACGGAAATGCTTTGAAAATGCTTGCAACAGCTGCACGCCTTGATATTGAAGATTTTCTACAGAAGAAAGTTTTTCTCGAGATTCAAGTAAAGGTTAAAGAAAATTGGCGACAAGACGAAGGGTTTCTTAAGCACAGTGGTTATGGAGGTCAAATAGGTGTTTATTGA	1263	0.4054	MKNLTLLAASTSTQQFLFQIHNSFFAVGFTTRTTFLPNRTTELTPHICCRTKQCRSKAFSTKQELLAALQKQEEEEEEEEEEEEAYSDDDTSFLSLSMKPDRSLGLLDDYETEELDFDPNHRSGYVALLGMPNVGKSTLANQMVGQRLSIVTDKPQTTRHRVLCICSGSDYQMILYDTPGVLQEQRHKLDSMMMQNVRSAAVNADCVLILVDACKAPEKIDEVLEGMGDHKDKVPTLLIMNKKDLIKPGEVAKKLEWYTKFTDVDEVIPVSAKYGHGVEDVKNWILSKLPNGPAYFPKDIISEHPERFFVGEIIREKIFLQYRKEIPYVCQVNVLSYKARPNAKDFIQVQILVEKNSQKIVVIGKNGNALKMLATAARLDIEDFLQKKVFLEIQVKVKENWRQDEGFLKHSGYGGQIGVY*	421

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr4g4189	420	ProSiteProfiles	Type-2 KH domain profile.	322	399	IPR004044	GO:0003723
	Tpr4g4189	420	MobiDBLite	consensus disorder prediction	71	89	-	-
	Tpr4g4189	420	PANTHER	GTPASE ERA-LIKE, CHLOROPLASTIC	77	414	-	-
	Tpr4g4189	420	SUPERFAMILY	Prokaryotic type KH domain (KH-domain type II)	298	413	IPR009019	GO:0003723
	Tpr4g4189	420	MobiDBLite	consensus disorder prediction	67	92	-	-
	Tpr4g4189	420	TIGRFAM	small_GTP: small GTP-binding protein domain	126	283	IPR005225	GO:0005525
	Tpr4g4189	420	CDD	Era	121	289	IPR030388	GO:0005525
	Tpr4g4189	420	Pfam	KH domain	325	402	IPR004044	GO:0003723
	Tpr4g4189	420	ProSiteProfiles	Era-type guanine nucleotide-binding (G) domain profile.	122	291	IPR030388	GO:0005525
	Tpr4g4189	420	PANTHER	GTPASE ERA	77	414	IPR005662	GO:0003723\|GO:0005525
	Tpr4g4189	420	TIGRFAM	era: GTP-binding protein Era	124	396	IPR005662	GO:0003723\|GO:0005525
	Tpr4g4189	420	Coils	Coil	59	89	-	-
	Tpr4g4189	420	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	126	323	IPR027417	-
	Tpr4g4189	420	Gene3D	-	302	417	IPR015946	-
	Tpr4g4189	420	Gene3D	-	118	300	IPR027417	-
	Tpr4g4189	420	Hamap	GTPase Era [era].	121	413	IPR005662	GO:0003723\|GO:0005525
	Tpr4g4189	420	Pfam	50S ribosome-binding GTPase	126	242	IPR006073	GO:0005525

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr4g4189	Tpr-Chr4	48917834	48922718	Proximal

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr4g4189	K03595		-	gmx:100815820	574.318

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr4g4189	4	48917834	48922718	Tpr4g4189	4	48917834	48922718	ECH