Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4174 ATGCCTTTAGGGGAAGACTATGAAGATATTAGGAACCTTAGAAAACCATTAGTCAACAACAATAATAATGCTGGAAATGGCTCTTTTTATATTGTGCTATGTGTTATCATTGTAGCTTTGGGTCCTCTCCAATTCGGTTTCACGTGTGGCTATTCTTCGCCAACAGAAACAGATATGACACGAGATCTTAATCTCACAATTTCGCAGTTTTCGTTGTTTGGTTCTTTGGCCAACATTGGTGCAATGGTTGGAGCAATGTCCAGTGGTCAAATAGCAGGATACTTTGGGCGTAAAGGGTCACTAATAGTGGCAGCAATCCCAAATATATTTGGATGGCTTGCCATTTCATTGGCCAAAGACTCATCGCTTTTATATATAGGAAGATTGTTGGAAGGTTTTGGAGTGGGGATAATCTCTTATGTGGTACCTATTTATATAGCAGAGATATCACCAAGAACTATGAGGGGTAGTCTGGGATCTGTGAACCAGCTATCAGTTATGACTGGGATCATGTTGGCTTATTTGTTAGGCATGCTTTTTGAATGGAGAACTCTAGCAATGTTAGGAATTTTGCCTTGTGCAATACTAATACCTGGGCTACACTTCATTCCAGAATCACCTAGATGGTTGGCCGAAATGGGATTTATGGAAAGGTTTGAATCTTCACTACAATCTTTAAGAGGACCCAATGTTGATATTAACATAGAATCACAAGAAATAAAGGGATCATTGGCATCAACCGCACAAACAGATTCTGTACGCTTAGAAGATCTCAAGAGGAGAAGATATTGGTTTCCTTTAATGGTAGCTATGGGATTGCTTGTGCTGCAACAATCTTGTGGTATCAATGGAGTATTTTTCTATTCAAGTAAAATCTTTTCAAATGCAGGAATTAAATCCAGCAATGCTGCAACATTTGGACTAGGAGCTACAATGGTTGTAGTGACTGGGGTCACTACTTGGTTGGTAGACAGAACTGGCCGAAGAGTGCTTCTCATAGTATCTTCCTCTGTGATGACAATTAGCCTGCTCCTTATTGCTACAGCATTCTATCTACAGGGAGTTGTAAGAAAGGACTCTGACCTTCATCAAATGATGGCGGTGATCTCTCTTGTGGGACTTCTGGCTTTGGTAATTGGTTTTTGTCTTGGTGTTGGACCACTTCCTTGGCTTATAATGTCTGAGATACTTCCACCAAATATTAAGGGCTTAGCTGGAAGTGCAGCAACATTTCTCAATTGGTTCACTGCCTCAGTTGTCACTTTGACTGCACACTTTCTTCTAAGTTGGAGCAATGCAGGAACATTCACAATTTATGCAATTTTTTCTGCCATTAACGTTGCTTTTGTTATACTTTGGGTTCCTGAGACTAAGGACAGAACATTGGAAGAAATTCAGGCATCATTTATTAGATAA 1416 0.399 MPLGEDYEDIRNLRKPLVNNNNNAGNGSFYIVLCVIIVALGPLQFGFTCGYSSPTETDMTRDLNLTISQFSLFGSLANIGAMVGAMSSGQIAGYFGRKGSLIVAAIPNIFGWLAISLAKDSSLLYIGRLLEGFGVGIISYVVPIYIAEISPRTMRGSLGSVNQLSVMTGIMLAYLLGMLFEWRTLAMLGILPCAILIPGLHFIPESPRWLAEMGFMERFESSLQSLRGPNVDINIESQEIKGSLASTAQTDSVRLEDLKRRRYWFPLMVAMGLLVLQQSCGINGVFFYSSKIFSNAGIKSSNAATFGLGATMVVVTGVTTWLVDRTGRRVLLIVSSSVMTISLLLIATAFYLQGVVRKDSDLHQMMAVISLVGLLALVIGFCLGVGPLPWLIMSEILPPNIKGLAGSAATFLNWFTASVVTLTAHFLLSWSNAGTFTIYAIFSAINVAFVILWVPETKDRTLEEIQASFIR* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4174 471 Pfam Sugar (and other) transporter 35 469 IPR005828 GO:0016021|GO:0022857|GO:0055085
Tpr4g4174 471 SUPERFAMILY MFS general substrate transporter 28 466 IPR036259 -
Tpr4g4174 471 ProSitePatterns Sugar transport proteins signature 2. 130 155 IPR005829 GO:0016021|GO:0022857|GO:0055085
Tpr4g4174 471 Gene3D MFS general substrate transporter like domains 26 471 IPR036259 -
Tpr4g4174 471 CDD MFS_GLUT6_8_Class3_like 32 464 IPR044775 GO:0008643|GO:0051119
Tpr4g4174 471 PRINTS Sugar transporter signature 42 52 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tpr4g4174 471 PRINTS Sugar transporter signature 125 144 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tpr4g4174 471 PRINTS Sugar transporter signature 277 287 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tpr4g4174 471 PRINTS Sugar transporter signature 371 392 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tpr4g4174 471 PRINTS Sugar transporter signature 394 406 IPR003663 GO:0016020|GO:0022857|GO:0055085
Tpr4g4174 471 PANTHER SUGAR PORTER (SP) FAMILY MFS TRANSPORTER 13 469 - -
Tpr4g4174 471 PANTHER - 13 469 - -
Tpr4g4174 471 ProSiteProfiles Major facilitator superfamily (MFS) profile. 34 458 IPR020846 GO:0022857
Tpr4g4174 471 TIGRFAM SP: MFS transporter, sugar porter (SP) family 23 465 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4174 Tpr-Chr4 48751598 48760635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4174 1 469 Organic Solute Cotransporters AT1G75220 61.317 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4174 K03444 - gmx:100798102 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4174 4 48751598 48760635 Tpr4g4174 4 48751598 48760635 ECH