Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4168 ATGAAAACAAAAACACAAAACGAAGGAAGAGTAGTATTTGCTTTCTCTTTCTCGATCCCTCTCTCTCAAAATCGCTGCTCTCAATTCCTCTCTCACCCGCCGGCCGCCGCTCTCAATCCCTCTCTCACTGCTCTCAGTCTCTCTCCCTCACCTCGCCGTTCAATCTTCCGCCGCAGCCGCACCACTGCTCAGCTCACCGCGCCGCTCTCACTCTTTCTCTTCGTCTCGTTTGAGGTTTTGGCCTTCTCTCTAGGAATGGGTCTTCTCAGCATCATTCGGAAAATCAAAAAGAAGGAGAAGGAAATGCGAATTCTTATGGTTGGGTTGGACAATTCTGGGAAAACTACAATTGTTTTAAAGATTAATGGGGAGGACACTAGTGTCATAAGTCCTACCCTTGGCTTCAACATCAAAACCATCACCTACCAGAAGTACACTCTAAATATATGGGATGTTGGGGGCCAAAAAACAATCCGATCTTACTGGCGAAACTACTTTGAGCAAACAGATGGTTTGGTTTGGGTGGTTGACAGTTCGGATCTTAGAAGGTTGGATGATTGCAAAATGGAGCTAGATAACCTTCTAAAGGAAGAGAGACTATCTGGATCATCCTTACTAATATTAGCAAATAAACAAGATATTAAAGGTGCCCTTGCACCCGCAGAAATAGCTAAGGTGTTGAACTTGGAAGCTATGGATAAATCTCGGCACTGGATGATAGTTGGATGTAGTGCATATACTGGCGAGGGTCTGCTTGAGGGATTTGATTGGTTGGTCCAGGACATAGCCTCTAGAATCTACATGCTCGACTAA 813 0.4502 MKTKTQNEGRVVFAFSFSIPLSQNRCSQFLSHPPAAALNPSLTALSLSPSPRRSIFRRSRTTAQLTAPLSLFLFVSFEVLAFSLGMGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQKYTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGSSLLILANKQDIKGALAPAEIAKVLNLEAMDKSRHWMIVGCSAYTGEGLLEGFDWLVQDIASRIYMLD* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4168 270 SMART sar_sub_1 88 262 IPR006689 GO:0003924|GO:0005525
Tpr4g4168 270 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2 86 270 - -
Tpr4g4168 270 Gene3D - 89 267 IPR027417 -
Tpr4g4168 270 PRINTS GTP-binding SAR1 protein signature 103 126 IPR006689 GO:0003924|GO:0005525
Tpr4g4168 270 PRINTS GTP-binding SAR1 protein signature 131 155 IPR006689 GO:0003924|GO:0005525
Tpr4g4168 270 PRINTS GTP-binding SAR1 protein signature 158 183 IPR006689 GO:0003924|GO:0005525
Tpr4g4168 270 PRINTS GTP-binding SAR1 protein signature 236 260 IPR006689 GO:0003924|GO:0005525
Tpr4g4168 270 ProSiteProfiles small GTPase Arf family profile. 95 262 - -
Tpr4g4168 270 SMART arf_sub_2 84 266 - -
Tpr4g4168 270 Pfam ADP-ribosylation factor family 89 262 IPR006689 GO:0003924|GO:0005525
Tpr4g4168 270 CDD Arl2 102 261 IPR045873 GO:0003924
Tpr4g4168 270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 264 IPR027417 -
Tpr4g4168 270 TIGRFAM small_GTP: small GTP-binding protein domain 100 236 IPR005225 GO:0005525
Tpr4g4168 270 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-RELATED 86 270 IPR044612 GO:0003924
Tpr4g4168 270 SMART rab_sub_5 102 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4168 Tpr-Chr4 48685999 48693175 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4168 K07943 - gmx:100805880 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4168 4 48685999 48693175 Tpr4g4168 4 48685999 48693175 ECH