Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4165 ATGATAAGAGCAGTGCTAGTGATGAACACGCAAGGGAAGCCTCGTCTCGCTAAATTCTACGAATTTATGCCTGTGGAAAAGCAGCAGGAAATTATTCGGAATGTGTTTGCAGTCTTATGCAGTAGACCTGAACATGTCAGCAATTTTGTGGATGCTGAGTCCTTCTTTGGACCGGATGCTCGCCTCGTCTACAAGCACTTGGCAACTCTATACTTTGTCTTCATATTTGATGGTTCTGAAAACGAACTTGCTATGCTTGATTTGATACAAGTCTTTGTTGAAACACTGGACAAATGCTTCAGAAATGTATGCGAGCTTGATGTAGTGTTCAACTATAGTAAGATGCATACTATACTAGATGAGATTATTTTTGGAGGCCAGGTGTTAGAGACAAGTTCAACTGAAGTTATGAAGGCTGTTGAAGAAATATCAAAGCTTGATGCAGCATCCAGCGCAATCAATCTTGTTCCCAAATCTGTTTCTAGTTGGAGGTCACGATAG 501 0.4092 MIRAVLVMNTQGKPRLAKFYEFMPVEKQQEIIRNVFAVLCSRPEHVSNFVDAESFFGPDARLVYKHLATLYFVFIFDGSENELAMLDLIQVFVETLDKCFRNVCELDVVFNYSKMHTILDEIIFGGQVLETSSTEVMKAVEEISKLDAASSAINLVPKSVSSWRSR* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4165 166 Pfam Clathrin adaptor complex small chain 1 145 IPR022775 -
Tpr4g4165 166 Gene3D - 1 158 - -
Tpr4g4165 166 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 1 155 IPR016635 GO:0015031
Tpr4g4165 166 PIRSF AP_complex_sigma 1 156 IPR016635 GO:0015031
Tpr4g4165 166 ProSitePatterns Clathrin adaptor complexes small chain signature. 62 72 IPR000804 GO:0006886|GO:0016192|GO:0030117
Tpr4g4165 166 PANTHER AP COMPLEX SUBUNIT SIGMA 1 155 - -
Tpr4g4165 166 SUPERFAMILY SNARE-like 1 144 IPR011012 -
Tpr4g4165 166 CDD AP3_sigma 1 145 IPR027155 GO:0006896|GO:0030123
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4165 Tpr-Chr4 48664909 48668498 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4165 K12399 - tcc:18610934 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4165 4 48664909 48668498 Tpr4g4165 4 48664909 48668498 ECH