Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4157 ATGGTTCACAGTGCCTACGATTCCTTCGAGCTTCTCACAAATTCTCCATCCAAAATCGAATCCATCGAATCCTACGCTTCTAAAATCCTCTTAGGATGCACTGACGGATCTCTCCTCGTTTACGCGCCGGCATCGGAGGAAATGCGGAATGAAACATATACATTAGAGAGAAACCTAAAAGGATTTGCGAGAAGGCCTGTGATTTCAATGCTGGTGGTGGAATCGAGAGAGCTTCTTCTCTCGCTATCGGAATCCATCGCGTTTCATAAGCTTTCTACATTTCAAACCATTGCTGTTATTACTAAGGCGAAAGGTGCTCATGCTTTTTGCTGGGATGAACAGAGAGGTTTATTGTGCTTTGCTAGACAGAAGCGAGTGTGTATCTTTAGACACGACGGTGGTAGAGGGTTTGTGGAGATGAAAGACTTTGGTGTTCCTGATGTGGTGAAGTCAATGAGTTGGTGTGGTGTGAATATATGTCTGGGGATTAGAAAAGAGTATGTGATTCTGAATGCTACAAATGGTGCAATATCTGAAGTTTTTACTTCTGGGAGGATAGCACCACCTTTGGTGGTATCACTTCCTTCTGGAGAGCTCCTTCTGGGCAAGGAGAATATTGGTGTCATTGTGGACCAAAATGGAAAACTTCGTCCAGATGGTAGGATTTGTTGGTCAGAGGCCCCATCAGAAGTCGTAATTCAGAAGCCATATGCTTTAGCCCTGCTGCCAAGATTTGTGGAGATTCGATCTCTCCGAGCTCCATATCCATTGATACAAACAATAGTTTTTCGAAACATTCGCCATCTTCGCCAGAGCCATAACTCAGTGATCATTGCTTTAGAAAATTCTGTGCATGGCCTCTTTCCTGTTCCTGTTGGAGCCCAGATTGTCCAATTAACAGCCGCAGGTAACTTTGAAGAAGCTTTGTCATTGTGCAAGCTCCTTCCACCCGAAGATTCAAATCTTCGTGCTGCAAAGGAGGGTTCAATTCATATAAGATATGCCCACTATCTTTTTGACAACGACAGCTATGAGGAGTCAATGGAGCATTTCCTAGCATCTCAAGTAGATATAACTCATGTGCTTTCTCTGTACACATCCATTATCCTTCCGAAGACAACTATTGTTCATGATCCAGATAAATTGGACATTTTTGGGGATGCTATGCCTCTCTCCAGAGGTTCTTCGGCTATGTCTGATGATATGGAACCCTCTCCAGAATTGGATGACAATGCAGAACTTGAATCAAAAAAAATGAGCCATAATATGCTTATGGCTCTCATAAAATATTTGCAGAAGAAGAGACCTAGTATTATTGAGAAGGCCACAGCAGAAGTAACTGAGGAAGTTGTTTTTGATGCAGTTGGTAATAACTTTGCATCCAATAACAGTAATAGGTTTAAGAAAATAAACAAGGGGCGTGGTAGTGCACCTGTTAGTTCGGGAGCTCGGGAGATGGCTTCAGTATTGGATACTGCTCTACTCCAAGCATTGCTTCTAACTGGACAACCTTCTATGGCTGAAAATTTGTTGAGAGGTCTTAACTACTGTGATTTGAAAATATGTGAAGAGATGCTTCAAGAAGGCAGTTATCATGTTGCTTTAGTAGAACTTTACAAGTGCAACTCCATGCACCGGGAAGCCCTTGAACTTATTGATAAATTGGTGAAAGAATCAAAGTCTAGCCAATCTAAGATTGTACATAGATTCAATCCCGAGGCCATCATCGAGTACCTCAAGCCACTTTGTGAAACAGACCCAACACTTGCTCTAGAGTACTCCATGCTTGTTCTTGAAAGCTGCCCAACCCAAACTATACAGCTCTTTTTGTCTGGAAATATTCCAGCAGATATGGTTAACTTATATTTGAAGCAACATGCTCCAAACTTGCAAGCCACATACTTGGAGCTCGTGCTTTCAACGAATGAGGATGCTGTCTCTGGAACATTGCAAAATGAAATGGTACATATCTATCTTTCTGAAGTACTTGATTGGCATGCTGATTTAAGTTCTCAACATCAATGGGACGAAAAGGTTTATTCCCCTAAAAGGAAAAAATTATTGTCTGCCTTGGAGAGTATATCAGGATATAATCCAGAAACTCTGCTTAAACTTCTTCCGTCAGATGCTTTATACGAAGAGCGGGCAATATTGTTTGGAAAAATGAACCAGCATGAACTAGCATTATCTTTGTATGTTCATAAGCTTCATGTTCCAGAACTGGCATTGTCATATTGTGATCATGTGTATGATTCTACCCATAAGCCTTCTGTAAAATCTCCCAGCAACATATACTTGATGCTTCTGCAAATCTATTTGAATCCACGGAGGACGACTGTGAACTATGAAAAGAAAATTTCAAATATATTATCCCCACAGAGTAAATCCCTTCGAAGGGTTGCTTCAAAATCATTATCAAGAACTAGAAGTCGAGGATCAAGGAAAATTGCTGCAATAGAGATTGCAGAGGACACAAAAACTAGTCTGACTAGCGACAGTGGTAGGAGTGATGCTGACATGGATGAATTTATTGAGGAAGGAAGTACTTCTATCATGCTTGATGAGGCCCTCGATTTGTTAAGTCGCAGGTGGGATAGAATCAATGGAGCCCAAGCCCTTAAACTCCTACCAAAAGAGACCAAATTGCAGAACTTGCTTCCATTTCTTGGACCCCTTGTGAGAAAATCTAGTGAAATGTACCGTAATTGCTCAATTGTCAGGAGCTTGAGACAGAGTGAGAACCTTCAGGTGAAAGATGAACTCTACAGTAAGAGAAAAGAAGTTATAAAGATTAGTGGTGATAACATGTGCTCCTTGTGCAATAAGAAAATAGGGACTAGTGTTTTTGCAGTTTATCCGAATGGGAAAACTCTAGTGCATTTTGTCTGTTTCAGAGATTCTCAAAGTATGAAAGCTGTCGCCAAAGGGTCTCCGTGCAAAAAGGCATTTTAA 2952 0.4116 MVHSAYDSFELLTNSPSKIESIESYASKILLGCTDGSLLVYAPASEEMRNETYTLERNLKGFARRPVISMLVVESRELLLSLSESIAFHKLSTFQTIAVITKAKGAHAFCWDEQRGLLCFARQKRVCIFRHDGGRGFVEMKDFGVPDVVKSMSWCGVNICLGIRKEYVILNATNGAISEVFTSGRIAPPLVVSLPSGELLLGKENIGVIVDQNGKLRPDGRICWSEAPSEVVIQKPYALALLPRFVEIRSLRAPYPLIQTIVFRNIRHLRQSHNSVIIALENSVHGLFPVPVGAQIVQLTAAGNFEEALSLCKLLPPEDSNLRAAKEGSIHIRYAHYLFDNDSYEESMEHFLASQVDITHVLSLYTSIILPKTTIVHDPDKLDIFGDAMPLSRGSSAMSDDMEPSPELDDNAELESKKMSHNMLMALIKYLQKKRPSIIEKATAEVTEEVVFDAVGNNFASNNSNRFKKINKGRGSAPVSSGAREMASVLDTALLQALLLTGQPSMAENLLRGLNYCDLKICEEMLQEGSYHVALVELYKCNSMHREALELIDKLVKESKSSQSKIVHRFNPEAIIEYLKPLCETDPTLALEYSMLVLESCPTQTIQLFLSGNIPADMVNLYLKQHAPNLQATYLELVLSTNEDAVSGTLQNEMVHIYLSEVLDWHADLSSQHQWDEKVYSPKRKKLLSALESISGYNPETLLKLLPSDALYEERAILFGKMNQHELALSLYVHKLHVPELALSYCDHVYDSTHKPSVKSPSNIYLMLLQIYLNPRRTTVNYEKKISNILSPQSKSLRRVASKSLSRTRSRGSRKIAAIEIAEDTKTSLTSDSGRSDADMDEFIEEGSTSIMLDEALDLLSRRWDRINGAQALKLLPKETKLQNLLPFLGPLVRKSSEMYRNCSIVRSLRQSENLQVKDELYSKRKEVIKISGDNMCSLCNKKIGTSVFAVYPNGKTLVHFVCFRDSQSMKAVAKGSPCKKAF* 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4157 983 Pfam Vacuolar sorting protein 39 domain 1 490 598 IPR019452 -
Tpr4g4157 983 Pfam Region in Clathrin and VPS 618 751 IPR000547 GO:0006886|GO:0016192
Tpr4g4157 983 PANTHER VACUOLAR SORTING PROTEIN 39 1 981 - -
Tpr4g4157 983 Pfam CNH domain 27 269 IPR001180 -
Tpr4g4157 983 ProSiteProfiles Citron homology (CNH) domain profile. 16 276 IPR001180 -
Tpr4g4157 983 Pfam Vacuolar sorting protein 39 domain 2 857 965 IPR019453 -
Tpr4g4157 983 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 606 780 IPR000547 GO:0006886|GO:0016192
Tpr4g4157 983 PANTHER CNH DOMAIN CONTAINING 1 981 IPR032914 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4157 Tpr-Chr4 48604840 48613520 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4157 K20183 - gmx:100775609 1490.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4157 4 48604840 48613520 Tpr4g4157 4 48604840 48613520 ECH