Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4156 ATGTTCCTTCTTAGAAGGCAAAACCAAAATCAGCCGGAGAATGGTTCCTCGAATAATGATGCTAAGATCTATGAACAGTTGGCTGAACTAAAAGCTGCTATTGGGCCCTTATCTGGGCGTCGATTGAAGTATTGCACTGATGCATGTTTAAAGAGATATTTAGAAGCACGGAACTGGAATGTTGATAAAGCCAAGAAAATGCTGGAGGAATCATTCAAGTGGAGGTCTACTTATAAGCCAGAGGAAATCCGATGGGCTGAAGTAGCACATGAGGGAGAGACGGGAAAAGTCTCCAGAGCTAACTTTCATGATAGACTTGGGAGAACAGTGCTTATTATGAGACCAGGGATGCAGAATACAGCATCGGAAGAAAATAATATCAAGCATTTAGTCTATCTGTTGGAAAATGCCGTACTTAATCTTTCCGAAGGTCAAGAACAAATGTCATGGTTGATAGACTTTTCAGGATTTTCATTTAGCACAAAGCTTTCTATTAAAACTGCTCGTGATATTATTCACATCTTACAAAACCACTATCCAGAAAGGCTTGGTATAGCTTTTCTGTACAATCCACCGAGAATATTTCAGGCTTTCTTTAAGGCTGTAAAATACTTCCTGGATCCCAAAACAGCCCAGAAGGTAAAGTTTGTTTATCCTAACAATAAGGACAGCGTGGAGCTGATGAAATCACTCTTCGACATGGATAACCTTCCTAGTGAATTTGGTGGAAAAGCTACTTTAGAGTATGACCATGAAGAGTTCTCGCGGTTGATGACTGAGGACGATGTGAAAACTGCCAAGTTCTGGGGACTTGTTGATGAGAAGCCCTTCGCCACTAAGAATGGCCATTCTGGTGCAGAGGTAGCACCAGAACCTGTGGCCAGTATAGTTAGTTGA 897 0.4147 MFLLRRQNQNQPENGSSNNDAKIYEQLAELKAAIGPLSGRRLKYCTDACLKRYLEARNWNVDKAKKMLEESFKWRSTYKPEEIRWAEVAHEGETGKVSRANFHDRLGRTVLIMRPGMQNTASEENNIKHLVYLLENAVLNLSEGQEQMSWLIDFSGFSFSTKLSIKTARDIIHILQNHYPERLGIAFLYNPPRIFQAFFKAVKYFLDPKTAQKVKFVYPNNKDSVELMKSLFDMDNLPSEFGGKATLEYDHEEFSRLMTEDDVKTAKFWGLVDEKPFATKNGHSGAEVAPEPVASIVS* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4156 298 CDD SEC14 103 244 IPR001251 -
Tpr4g4156 298 SMART CRAL_TRIO_N_2 46 71 IPR011074 -
Tpr4g4156 298 Pfam CRAL/TRIO domain 102 243 IPR001251 -
Tpr4g4156 298 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 85 249 IPR001251 -
Tpr4g4156 298 PANTHER GH16843P 7 294 - -
Tpr4g4156 298 SMART sec14_4 91 246 IPR001251 -
Tpr4g4156 298 PRINTS Cellular retinaldehyde-binding protein signature 49 71 - -
Tpr4g4156 298 PRINTS Cellular retinaldehyde-binding protein signature 166 187 - -
Tpr4g4156 298 PRINTS Cellular retinaldehyde-binding protein signature 235 244 - -
Tpr4g4156 298 SUPERFAMILY CRAL/TRIO domain 86 261 IPR036865 -
Tpr4g4156 298 Gene3D - 4 280 IPR036865 -
Tpr4g4156 298 SUPERFAMILY CRAL/TRIO N-terminal domain 16 86 IPR036273 -
Tpr4g4156 298 PANTHER DIVERGENT CRAL/TRIO DOMAIN PROTEIN 7 294 - -
Tpr4g4156 298 Pfam CRAL/TRIO, N-terminal domain 46 70 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4156 Tpr-Chr4 48594202 48598009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4156 50 238 Acyl Lipid Metabolism Gene Families AT1G55840 28.293 1.16e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4156 - - gmx:100800024 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4156 4 48594202 48598009 Tpr4g4156 4 48594202 48598009 ECH