Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4148 ATGGCAGACCCCAATAACGATCCTCTCTTGCGCAACCAAAACGCCGCCGTTCAAGCTCGTACCAAAGCTCAGAACCGCGCCAACGTTCTTCAACTCAAGCTGATTGGACAGAGTCATCCAACTGGTTTGACCACGAATTTGTTGAAACTGTTTGAGCCCCGGCCTCCTTTGGAGTATAAACCTCCTCCTGAGAAAAGAAAATGTCCTCCGTTAACAGGGATGGCGCAATTTGTGAGCAAGTTTGCTGAACCTGGTGAACCGGAATATTCTCCGCCTGTGCCAGTTGTTGAAACTCCTGCAGAAAGAAGGGCTAGAGTACACAAGTTAAGACTAGAGAAGGGAGCTGCAAAGGCTGCTGAGGAGCTTGAGAAATATGATCCACATACTGATCCAAATATATCAGGAGATCCATACAAGACTTTATTTGTGGCCAGACTCAGTTATGAGACTACTGAAAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTGCAATCAAACGGGTTCGGCTGGTTACTGATACTGAGTCAAATAAGCCCAGGGGTTATGCATTCATTGAATACCTGCACACAAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGAGGGTAGAAGAGTGCTTGTGGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGCGACCTCGCCGTCTAGGTGGTGGGCTTGGTACTACTAGAGTGGGGGGCGAAGAAGTTAATCAGCGACATTCGGGAAGGGAGCAACAGCAGTCAGGACCTTCTCGTTCTGAAGAACCAAGAGTGCGGGAGGATCGGCATGTTGATCGGGACAGAGAAAAGTCACGTGAAAGAGGTAAGGAAAGAGATAGAGAACGGGAGCGATCACGGGAGCGATCTAGCGATAAGCCTAGGGATCGTGATCATAGAGAGGATAGACACCACAGAGATCGGGACCGGGATAGGAATAGGGACAGGGACAGGGGTAAGGAGAGGGAAAGAGAAAGAGATCGCGGACGTGATCGAGAGAGAGGACGTGACCGTGATCGTGGTCGGGAACGTGATCGTGATCGAGAGAGGGATCATGATCGGGACGTGGAACATGATCGTTATCGCGAAAAGGATAAGGATTATGAAGTTGGGGATACTGATCGGGGACGATCCCATGATAGGGTGGCTGATTATGATCATGTGGAATCTAAACATGAGAAGGAACCTCATGGTGAAAAAGAGCGGGACTATGAACCTGATGATCATCGTGGGCGGTACAACCAACCTGGGCATGGAAAAAGGCATGCAGATACTGAACATGATCCTGATCGCTATGACCATTATGAGCATCAGAGAGGACGGGGGCAATATGATGAAGGAGATGACCATGGTGATTATAATCAATATCCCGACCATGATAAGATGGAAGATGACCATCACACTGAACGGCCAAAATCTAAATCACGTGATAGGGACAGAAACCGTGACAAGGACCATGATTATCATCGCTCAGAGAGGTCCCATTCTCGAGAATATGATTACTAG 1521 0.4799 MADPNNDPLLRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTTNLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEKYDPHTDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDTESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSGPSRSEEPRVREDRHVDRDREKSRERGKERDRERERSRERSSDKPRDRDHREDRHHRDRDRDRNRDRDRGKERERERDRGRDRERGRDRDRGRERDRDRERDHDRDVEHDRYREKDKDYEVGDTDRGRSHDRVADYDHVESKHEKEPHGEKERDYEPDDHRGRYNQPGHGKRHADTEHDPDRYDHYEHQRGRGQYDEGDDHGDYNQYPDHDKMEDDHHTERPKSKSRDRDRNRDKDHDYHRSERSHSREYDY* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4148 506 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 210 IPR000504 GO:0003723
Tpr4g4148 506 Gene3D - 126 251 IPR012677 -
Tpr4g4148 506 CDD RRM_snRNP70 138 228 IPR034143 GO:0030619
Tpr4g4148 506 PANTHER - 8 367 - -
Tpr4g4148 506 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Tpr4g4148 506 MobiDBLite consensus disorder prediction 7 21 - -
Tpr4g4148 506 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 42 130 IPR022023 -
Tpr4g4148 506 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 8 367 - -
Tpr4g4148 506 MobiDBLite consensus disorder prediction 1 21 - -
Tpr4g4148 506 SUPERFAMILY RNA-binding domain, RBD 127 239 IPR035979 GO:0003676
Tpr4g4148 506 MobiDBLite consensus disorder prediction 259 506 - -
Tpr4g4148 506 MobiDBLite consensus disorder prediction 221 506 - -
Tpr4g4148 506 SMART rrm1_1 140 213 IPR000504 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4148 K11093 - rcu:8273430 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4148 4 48472796 48478773 Tpr4g4148 4 48472796 48478773 ECH