Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4125 ATGGCTAGCATTCTAAAACCATCCAAATGGTTCTCTAGCAAAGGTCTTAAGCATAGATCAAAATCTTCCAATTCATCATCACTATGCTCTCCAAAATCTCCAATGATGAATTATAACAAGAATGAAGATGATAAAGGATTAAGAGAGGTTTTCAAATACTTTGATGGAGATGGAGATGGAAAAATTTCAGCCTATGAATTAAGGTCATATTTTGGGTCAATTGGAGAGCACATGTCTCATGAAGAAGCCGAAAGGGTGATTCGATATATCGATACCGATGCCGATGACTTGTTAGATTTTAATGATTTCATTAAGTTGATGAAAGGTGAAGAAGGAAGTGAAAATGATAAAGATTTAAGAAAAGCTTTTGAGATGTTTGTTTGGGATGAGAAAGAAGATTGTATTACTCCAAAAGGGTTGCAAAGGATGTTGCAACGTCTTGGAGATGATAGGTCTTATGAAGAGTGTGTTGTTATGATTGATGCATTTGATGTAGATCATAATGGGGTTCTTGATTTCGATGAGTTTCATCAAATGATGGTTTAA 546 0.348 MASILKPSKWFSSKGLKHRSKSSNSSSLCSPKSPMMNYNKNEDDKGLREVFKYFDGDGDGKISAYELRSYFGSIGEHMSHEEAERVIRYIDTDADDLLDFNDFIKLMKGEEGSENDKDLRKAFEMFVWDEKEDCITPKGLQRMLQRLGDDRSYEECVVMIDAFDVDHNGVLDFDEFHQMMV* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4125 181 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
Tpr4g4125 181 ProSiteProfiles EF-hand calcium-binding domain profile. 78 113 IPR002048 GO:0005509
Tpr4g4125 181 SMART efh_1 82 110 IPR002048 GO:0005509
Tpr4g4125 181 SMART efh_1 46 74 IPR002048 GO:0005509
Tpr4g4125 181 SMART efh_1 155 181 IPR002048 GO:0005509
Tpr4g4125 181 SUPERFAMILY EF-hand 36 181 IPR011992 -
Tpr4g4125 181 ProSitePatterns EF-hand calcium-binding domain. 91 103 IPR018247 -
Tpr4g4125 181 Gene3D - 11 111 - -
Tpr4g4125 181 Gene3D - 112 181 - -
Tpr4g4125 181 Pfam EF-hand domain pair 133 181 IPR002048 GO:0005509
Tpr4g4125 181 Pfam EF-hand domain pair 46 108 IPR002048 GO:0005509
Tpr4g4125 181 PANTHER CALCIUM BINDING PROTEIN 27 180 - -
Tpr4g4125 181 MobiDBLite consensus disorder prediction 17 37 - -
Tpr4g4125 181 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Tpr4g4125 181 CDD EFh 47 108 IPR002048 GO:0005509
Tpr4g4125 181 ProSitePatterns EF-hand calcium-binding domain. 164 176 IPR018247 -
Tpr4g4125 181 ProSiteProfiles EF-hand calcium-binding domain profile. 151 181 IPR002048 GO:0005509
Tpr4g4125 181 PANTHER CALCIUM-BINDING PROTEIN CML41-RELATED 27 180 - -
Tpr4g4125 181 MobiDBLite consensus disorder prediction 13 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4125 Tpr-Chr4 48191236 48192083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4125 6 181 EF-hand Containing Proteins AT3G50770 48.485 1.23e-56 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4125 K13448 - gmx:100500092 229.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4125 4 48191236 48192083 Tpr4g4125 4 48191236 48192083 ECH