Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3891 ATGGCTACATCTCTTTCTTCTGTAATTCACATCACATTTCTTGACACCAAAACAACACAAAGAAGATTCATCACTCCTTCAAAATCTCATAGAAAATTTCTCGTAAATTCATCAAAATCTACTCCAGATACACCTCTCACACCAATTTCCGACAACAAAAAAAACTCATCTTTATCCGACCAACTTGCTTCTCTTGCAAACACAACCTTATCCACTGTCCCAGAAGACCAACCCGAAATCTTATCAAAACCAAATCCAACATGGGTCAATCCCACTAAAGCTAAACGTCCTATGTTGTCTCAGCAGAAACAAAAACGTTCTTCTGTTTCATATAATCCACAGTTAAGAGAGTTTCAACAGTTTGCTCAGAGATTGAACAACTGTGATTTGTCTAATGAAGAAGAATTTATGGCTTGTTTGGAAGAAATTCCAACAACTTCACTTAGTAGAGTAAATGTTCTATTGGTGCTTAATAGTTTGAGACCATGGCAGAAGACTTATAAGTTCTTGAATTGGATCAAGAGTAAGGATTTGATTCCTATGGAAACTATATTTTATAATGTTACAATGAAGTCTTTGAGATTTGGGAGACAGTTTGGGATTATAGAAGAGCTTGCACTCCAGATGATTGATAATGGGATTGAAATGGATAACATTACTTACTCAACTATTATAAGTTGTGCTAAGAAGTGTAATCTTTTTGATAAAGCTGTGCATTGGTTTGAGAAGATGTACAAGATGGGGTTGATGCCTGATGAGGTAACTTTTTCGGTTATTTTAGATGTTTATGCTAGGTTAGGTAAGGTTGAAGAAGTTGTTAGTTTGTTTGAGAGAGGGAGGGCAACTGGGTGGAAGCCTGATCCGATTACATTTTCGGTGTTGGGGAAGATGTTTGGGGAGGCTGGTGATTATGATGGGATTAGATATGTTTTGCAGGAGATGAAGTCTCTTGGAGTGCAGCCTAATTTAGTTGTGTATAATACTTTGTTGGAAGCAATGGGTAAGGCGGGGAAGCCGGGGTTTGCGAGGAGCTTGTTTGAAGAAATGGTTGATTCGGGGATAGCTCCGAATGAGAAGACTCTAACTGCGGTAATTAAGATATATGGAAAGGCTAGGTGGTCTAAAGATGCTTTGGAATTGTGGAAACGAATGAAGGAAAACGGTTGGCCTATGGATTTTATGTTGTATAATACATTGTTGAGTATGTGTGCAGATGTTGGATTACTCGAAGAAGCTGAAACTCTGTTTAAAGATATGAAACAGTCTGAGTATTGCAAGCCAGATAGTTGGAGTTACACGGCTATGCTAAACATATATGGGAGTGAAGGAGATGTGGTTAAGGCAATTAAATTGTTTGAAGAGATGTGTAAGTTAGGTATTGAACTCAATGTGATGGGGTGTACTTGTTTGATTCAGTGCTTGGGAAAGGCCATGGAAATTAATGATTTGGTCAAAGTTTTCAACATTTATGTTGACAGAGGAGTTAAGCCAGATGATAGATTATGCGGTTGTTTGTTATCTATTGTGTCACTTTCTCAAGGTAGCAAGGATCAAGAAAAAGTCCTTGGTTGTTTGCAGCGAGCTAACCCGAAATTGGTTGCCTTTATTCAACTAATTGCTGATGAGGAAACTAGTTTTGAGACTGTCAAGGAAGAGTTTAAGAGTATAATGAGCAATGCTGTGGTTGAGGTGAGAAGACCCTTCTGCAATTGCTTGATTGACATATGTAGAAACAAAGATCTCCTAAAAAGAGCCCACGAGTTGCTCTACTTAGGGACTTTATATGGATTCTACCCAACTTTGCACAACAAAACACAATATGAATGGTGTTTAGACGTTCGAACATTGTCGGTTGGGGCAGCTCTAACTGCACTTGAAGAGTGGATGGCTACACTTGCCAAAATTGTTAAGCGAGATGAGGCATTACCGGACTTACTCCTAGCACAAACTGGTACCGGTGCTCATAAGTTTGCACATGGACTCAATATTTCTTTTGCCTCTCATTTGAGAAAATTGGCTGCTCCATTTAGGCAGAGCGAGGATAAAGTCGGTTGTTTTATTGCCACGAAAGAAGATTTAGTCTCCTGGGTGGAATCAAACTCACCGTCGGAATTTGTTGCAACATAA 2127 0.3893 MATSLSSVIHITFLDTKTTQRRFITPSKSHRKFLVNSSKSTPDTPLTPISDNKKNSSLSDQLASLANTTLSTVPEDQPEILSKPNPTWVNPTKAKRPMLSQQKQKRSSVSYNPQLREFQQFAQRLNNCDLSNEEEFMACLEEIPTTSLSRVNVLLVLNSLRPWQKTYKFLNWIKSKDLIPMETIFYNVTMKSLRFGRQFGIIEELALQMIDNGIEMDNITYSTIISCAKKCNLFDKAVHWFEKMYKMGLMPDEVTFSVILDVYARLGKVEEVVSLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMVDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFMLYNTLLSMCADVGLLEEAETLFKDMKQSEYCKPDSWSYTAMLNIYGSEGDVVKAIKLFEEMCKLGIELNVMGCTCLIQCLGKAMEINDLVKVFNIYVDRGVKPDDRLCGCLLSIVSLSQGSKDQEKVLGCLQRANPKLVAFIQLIADEETSFETVKEEFKSIMSNAVVEVRRPFCNCLIDICRNKDLLKRAHELLYLGTLYGFYPTLHNKTQYEWCLDVRTLSVGAALTALEEWMATLAKIVKRDEALPDLLLAQTGTGAHKFAHGLNISFASHLRKLAAPFRQSEDKVGCFIATKEDLVSWVESNSPSEFVAT* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3891 708 SUPERFAMILY HCP-like 234 461 - -
Tpr4g3891 708 Gene3D Tetratricopeptide repeat domain 122 262 IPR011990 GO:0005515
Tpr4g3891 708 Gene3D Tetratricopeptide repeat domain 263 368 IPR011990 GO:0005515
Tpr4g3891 708 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Tpr4g3891 708 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Tpr4g3891 708 PANTHER OS03G0856100 PROTEIN 24 701 - -
Tpr4g3891 708 Pfam Pentatricopeptide repeat domain 450 497 IPR002885 -
Tpr4g3891 708 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Tpr4g3891 708 MobiDBLite consensus disorder prediction 34 57 - -
Tpr4g3891 708 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Tpr4g3891 708 PANTHER OS03G0856100 PROTEIN 24 701 - -
Tpr4g3891 708 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Tpr4g3891 708 Gene3D Tetratricopeptide repeat domain 369 561 IPR011990 GO:0005515
Tpr4g3891 708 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Tpr4g3891 708 ProSiteProfiles Smr domain profile. 611 694 IPR002625 -
Tpr4g3891 708 Pfam PPR repeat 289 319 IPR002885 -
Tpr4g3891 708 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Tpr4g3891 708 TIGRFAM PPR: pentatricopeptide repeat domain 395 428 IPR002885 -
Tpr4g3891 708 TIGRFAM PPR: pentatricopeptide repeat domain 467 498 IPR002885 -
Tpr4g3891 708 TIGRFAM PPR: pentatricopeptide repeat domain 324 358 IPR002885 -
Tpr4g3891 708 TIGRFAM PPR: pentatricopeptide repeat domain 254 287 IPR002885 -
Tpr4g3891 708 TIGRFAM PPR: pentatricopeptide repeat domain 360 392 IPR002885 -
Tpr4g3891 708 TIGRFAM PPR: pentatricopeptide repeat domain 431 464 IPR002885 -
Tpr4g3891 708 TIGRFAM PPR: pentatricopeptide repeat domain 219 253 IPR002885 -
Tpr4g3891 708 MobiDBLite consensus disorder prediction 76 106 - -
Tpr4g3891 708 Pfam PPR repeat family 321 366 IPR002885 -
Tpr4g3891 708 Pfam PPR repeat family 223 264 IPR002885 -
Tpr4g3891 708 Pfam PPR repeat family 395 437 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3891 Tpr-Chr4 45167829 45170413 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3891 186 522 Glycosyltransferase AT1G05670 25.882 2.89e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3891 - - gmx:100780994 1124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3891 4 45167829 45170413 Tpr4g3891 4 45167829 45170413 ECH