Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3880 ATGGCTACAATGGACTTATTGATCTCACTCATTAACCGAATTCAACGAGCATGCACGCTCCTCGGCGACCACGGCGCCGACCAAACTTCTCGCTCTCTTTGGGAGTCTCTTCCCTCCGTCGCCGTCGTCGGCGGTCAGAGTTCTGGAAAATCATCGGTGTTAGAGAGTATCGTCGGACGTGATTTTCTTCCCCGTGGATCAGGGATTGTGACGCGGAGGCCTTTGGTACTGCAACTGCACAGAATAGAGGAAGGTTTACAAGAGCATGCAGAGTTTCTGCATTTGCCAAAGAAACGGTTTACTAATTTCTCTATGGTTCGAAAGGAAATTGAAGATGAAACTAATAGAATGACTGGGAAATCAAATCAGATATCTCCTGTTCCTATTCATCTCAGCATCTACTCACCAAATGTTGTCAATTTAACACTGGTAGATCTGCCTGGTTTGACAAAGGTCGCTGTAGAGGGTCAGCCCGAAAGTATTGTTCAAGACATTGAAAGCTTGATCCACTCATATGTTGATAAGCCTAATTGCTTAATTTTGGCCATCACTCCAGCAAATCAAGATGTAGCGACATCTGATGCCATCAAAGTTTCCAGACAAGTTGACCCCGCAGGTGAACGAACATTTGGTGTGTTGACAAAGATTGATTTGATGGACAAAGGCACAAATGCTTTGGATGTCCTTGAGGGAAGAGCATATCGACTTCGTATTCCTTGGGTGGGAATTGTAAACCGTTCTCAGGAAGATATTAATAGGAATGTAGATATGATTGCAGCTCGGAAAAGAGAGCGTGAATTTTTTGCCACCAATCCCGATTACGCACACTTGGCCAGCAAAATGGGCTCGGAATATCTAGCAAGGCTTCTCTCAAAGCATTTAGAGTCTGTGATAAGAGCTCGGATTCCAGGGATTGCATCTTTCATTAATAGAAGCATTAATGACCTTGAAGCAGAGTTGTGTCACCTTGGTAGACCAGTTTCTATAGATGCTGGGGCCCAACTGTACACTATTCTAGAATTATGCCGTGCTTTTGATCGGGTGTTTAAGGAGCATTTAGATGGAGGGCGACCAGGTGGTGACAAAATTTACATAGTTTTCGATTACCAGCTTCCTGCTGCATTGAGAAAGATTCCACTAGACCGTCATTTATCGTTGCAAAATGTGAAAAATGTTATTTCTGAGGCAGATGGATACCAACCTCATCTGATCGCTCCCGAGCAAGGTTATCGACGCCTCCTAGAGAGCTCACTCAATTATTTCAAAGGTCCCGCGCAAGCTTCTGTAGATGCTGTTCATTTTATCTTGAAGGAACTTGTGAGAAAGTCAATTGCCGAAACAGAGGAATTGAAGCGCTTTCCAACTCTTCGATCTGAAATAGCAGTAGCAGCTAACGAGGCGTTAGAGAGATTCCGTGAAGATGGCAAGAAGACAACATTAAGACTAGTGGAAATGGAATCTTCTTATATCACCGTTGATTTCTTCCGTAAACTACCACTAGAAGTCGTCGACAAGGGAGGGAATCAAGCTCCCGCCTCTGCTGAGGGACACTTCCAAAGGATTGGTTCAAACGTTTTATCTTATGTTGGGATGGTATCTGAAACATTGAGGAATACCATTCCAAAGGCTGTTGTTCATTGTCAAGTTAGGGAAGCAAAGCGATCTTTGCTAGATCACTTTTACGCACTACTCGGCAAAAAAGAGGCAATGCAACTCACGCGGTTGCTAGATGAAGATTCTGTGTTGTTGGAAAGGAGACAGCAATGTGCCAAGAGACTAGAGTTGTATAAGTCTGCAAGAGATGAGATTGATGCAGTTTGTTGGTCTGGATGA 1833 0.4397 MATMDLLISLINRIQRACTLLGDHGADQTSRSLWESLPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHRIEEGLQEHAEFLHLPKKRFTNFSMVRKEIEDETNRMTGKSNQISPVPIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPESIVQDIESLIHSYVDKPNCLILAITPANQDVATSDAIKVSRQVDPAGERTFGVLTKIDLMDKGTNALDVLEGRAYRLRIPWVGIVNRSQEDINRNVDMIAARKREREFFATNPDYAHLASKMGSEYLARLLSKHLESVIRARIPGIASFINRSINDLEAELCHLGRPVSIDAGAQLYTILELCRAFDRVFKEHLDGGRPGGDKIYIVFDYQLPAALRKIPLDRHLSLQNVKNVISEADGYQPHLIAPEQGYRRLLESSLNYFKGPAQASVDAVHFILKELVRKSIAETEELKRFPTLRSEIAVAANEALERFREDGKKTTLRLVEMESSYITVDFFRKLPLEVVDKGGNQAPASAEGHFQRIGSNVLSYVGMVSETLRNTIPKAVVHCQVREAKRSLLDHFYALLGKKEAMQLTRLLDEDSVLLERRQQCAKRLELYKSARDEIDAVCWSG* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3880 610 PRINTS Dynamin signature 37 55 IPR022812 -
Tpr4g3880 610 PRINTS Dynamin signature 62 79 IPR022812 -
Tpr4g3880 610 PRINTS Dynamin signature 135 152 IPR022812 -
Tpr4g3880 610 PRINTS Dynamin signature 185 203 IPR022812 -
Tpr4g3880 610 PRINTS Dynamin signature 204 220 IPR022812 -
Tpr4g3880 610 PRINTS Dynamin signature 227 246 IPR022812 -
Tpr4g3880 610 SMART dynamin_3 4 254 IPR001401 GO:0003924|GO:0005525
Tpr4g3880 610 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 63 72 IPR019762 -
Tpr4g3880 610 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 34 303 IPR030381 GO:0005525
Tpr4g3880 610 Pfam Dynamin GTPase effector domain 515 606 IPR003130 GO:0003924|GO:0005525
Tpr4g3880 610 Pfam Dynamin central region 224 492 IPR000375 -
Tpr4g3880 610 Gene3D - 4 312 IPR027417 -
Tpr4g3880 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 309 IPR027417 -
Tpr4g3880 610 PANTHER DYNAMIN-LIKE PROTEIN 1E 4 609 - -
Tpr4g3880 610 Gene3D Dynamin, middle domain 330 574 - -
Tpr4g3880 610 SMART GED_2 513 606 IPR003130 GO:0003924|GO:0005525
Tpr4g3880 610 ProSiteProfiles GED domain profile. 518 610 IPR020850 -
Tpr4g3880 610 PANTHER DYNAMIN 4 609 IPR022812 -
Tpr4g3880 610 Pfam Dynamin family 40 216 IPR045063 -
Tpr4g3880 610 CDD DLP_1 36 303 IPR001401 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3880 Tpr-Chr4 44966844 44973190 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3880 - - gmx:100818169 1018.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3880 4 44966844 44973190 Tpr4g3880 4 44966844 44973190 ECH