Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3871 ATGGCCGAATCGGTGGAACTTCCGACTCGCTTAGCGATCCTTCCCTTCCGTAACAAGGTTCTTTTACCTGGTGCTATCATCAGAATCCGTTGCACTTCCCCTAGCAGTGTGAAGTTGGTGGAACAAGAACTCTGGCAGAAAGAAGAGAAGGGGTTGATCGGCATCCTGCCTGTGCGTGATGCTCTTGAAATTAAGTCAGCAGGTACTACAGCATCTCAAGGAACCGATATTCTAGACCAAAGCTCAAAACTTCAAGACGGTTCATCAGATTCTCTCAAGTCTGATACCAAAAAGCAGAATGACATTGTTCATTGGCACAACAGGGGGGTTGCTGCTCGACCATTACATTTATCAAGGGGAGTGGAGAAACCAAGTGGGAGGGTCACATACACAGTTGTTCTTGAAGGCTTGTGCAGATTTAGTGTCCTGGAACTAAGCACAAGAGGAATATACCATACTGCAAGGATATCTTCCCTTGAGATGACTAAAACTGAGATGGAACAAATAGAGCAAGACCCAGATTACTTAATGTTGTCTCGCCAATTCAAAGCAACAGCAATGGAGCTTATTTCTCTTTTGGAGCTGAAACAAAAAACCGGTGGAAGAACCAAAGTCCTTTTGGACAACGTTCCAGTTCACAAGTTGGCTGATATATTTGTTGCAAGTTTTGAAATAAGTTTTGAAGAACAACTATCTATGTTGGATTCAGTTGGCCCTAAATTGAGGCTTTCAAAAGCAACTGAGTTAGTTGATAGACATTTACAGTCAATACGTGTAGCTGAGAAAATTACACAGAAGGTTGAAGGACAATTGTCAAAATCTCAAAAAGAATTTCTTCTGCGGCAGCAGATGAGGGCTATAAAAGAAGAACTTGGTGATAATGAGGATGATGAGGATGACCTGGTTGCTCTTGAAAGGAAGATGCAGAAGGCAGGAATGCCACCAAATGTATGGAAACATGCACACAGAGAGTTGAGGAGGCTTAAAAAAATGCAGCCTCAGCAACCTGGGTATAACAGTTCGCGGGTTTACCTTGATCTTCTTGCTGATCTGCCCTGGCAGAAGGCCAGCGAAGAGATTGAAATGGACTTAAGAGCTGCACAAAAGCGACTGGACAGTGATCACTATGGTTTAGTGAAGGTCAAGCAAAGAATTATTGAATACCTGGCAGTTCGCAAGCTTAAACCAGATGCAAGAGGTCCAGTGCTGTGCTTTGTTGGGCCACCAGGTGTCGGGAAAACATCATTGGCATCTTCTATTGCTGCAGCTTTGGGAAGAAAGTTTATCCGCATATCCCTTGGTGGAGTCAAGGATGAGGCCGATATTAGAGGACATAGGAGAACATATGTTGGAAGCATGCCTGGACGGCTTATAGATGGATTAAAGAAAGTAGCTGTTTGCAATCCTGTTATGTTGCTTGATGAAGTTGACAAGACGGGTTCTGATGTTCGTGGAGATCCAGCTTCAGCATTGCTAGAGGTTCTTGATCCAGAACAAAATAAAACATTCAATGATCACTATTTGAATGTTCCATTTGATCTGTCCAAGGTAATTTTTGTGGCTACAGCAAATAGGATGCAGCCTATTCCTCCACCGCTTCTAGATAGGATGGAAGTGATTGAGCTTCCTGGATATACACCTGAGGAAAAGCTCCAAATAGCCATGAAGCATTTGATTCCAAGAGTTTTGCTCCAACATGGTTTGAGTTCTGTGTTTATTGAGATTCCAGAGGCGATGGTGAAACTTATCATTCAAAGATATACTAGGGAAGCTGGTGTACGGAATTTGGAGAGGAATCTTGCTGCCCTGGCTCGTGCTGCTGCAGTAAGAGTTGTAGAGCAAGAACAAGTTGTTCCATTAAACAAAGGGATGCAAGGAATTTCTACTCCACTTCTGGAAAATAGACTCGCTGATGGAACTGGAGTTGAAGTGGATCTGATGCCAATGAGTGTAAATAGCCAGAACATCTCAAACACATTCAGGATTGCCTCTCTGTTGGTTGTTGATGAAACCATGCTTGAAAAAGTTCTCGGGCCTCCAAGATTTGATGATAGTGAAGCGGCAGAGCGTGTGGCTTCCCCTGGGGTCTCTGTTGGGCTGGTTTGGACTGCTTTTGGCGGAGAAGTTCAGTTTGTGGAGGCTACAGAAATGGTAGGGAAGGGCGAACTGCATCTCACTGGACAACTTGGTGATGTAATCAAAGAATCAGCTCAGATTGCACTAACATGGGTAAGGGCAAGGGCAACTGATCTTAGGCTGGATGCTGCAAAGGGATTTAATCTTTTGGAGGGCCGTGATGTACATATTCATTTTCCTGCGGGTGCTGTTCCTAAAGATGGGCCCTCGGCAGGTGTAACTTTAGTCACGTCATTGGTATCGCTTTTCACTCAGAAAAGTGTGAGATCAGATACAGCTATGACTGGAGAGATGACATTGAGGGGACTAGTTCTACCAGTCGGAGGTGTTAAGGATAAGATATTAGCTGCCCATCGTTATGGTATCAAGAGAGTTATCTTGCCTGAAAGGAACCTTAAAGACTTGGTTGAAGTACCATCATCAGTGCTGGCCAATTTGGAGATACTGCTTGCTAAACGAATGGAAGATGTGTTAGAGCATGCTTTTGATGGAGGGTGCCCATGGAGACAACACTCTAAGTTATAG 2661 0.4401 MAESVELPTRLAILPFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQKEEKGLIGILPVRDALEIKSAGTTASQGTDILDQSSKLQDGSSDSLKSDTKKQNDIVHWHNRGVAARPLHLSRGVEKPSGRVTYTVVLEGLCRFSVLELSTRGIYHTARISSLEMTKTEMEQIEQDPDYLMLSRQFKATAMELISLLELKQKTGGRTKVLLDNVPVHKLADIFVASFEISFEEQLSMLDSVGPKLRLSKATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNEDDEDDLVALERKMQKAGMPPNVWKHAHRELRRLKKMQPQQPGYNSSRVYLDLLADLPWQKASEEIEMDLRAAQKRLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFIRISLGGVKDEADIRGHRRTYVGSMPGRLIDGLKKVAVCNPVMLLDEVDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRMQPIPPPLLDRMEVIELPGYTPEEKLQIAMKHLIPRVLLQHGLSSVFIEIPEAMVKLIIQRYTREAGVRNLERNLAALARAAAVRVVEQEQVVPLNKGMQGISTPLLENRLADGTGVEVDLMPMSVNSQNISNTFRIASLLVVDETMLEKVLGPPRFDDSEAAERVASPGVSVGLVWTAFGGEVQFVEATEMVGKGELHLTGQLGDVIKESAQIALTWVRARATDLRLDAAKGFNLLEGRDVHIHFPAGAVPKDGPSAGVTLVTSLVSLFTQKSVRSDTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPSSVLANLEILLAKRMEDVLEHAFDGGCPWRQHSKL* 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3871 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 617 IPR027417 -
Tpr4g3871 886 Gene3D - 364 542 IPR027417 -
Tpr4g3871 886 Gene3D - 303 351 - -
Tpr4g3871 886 Coils Coil 287 307 - -
Tpr4g3871 886 Pfam ATP-dependent protease La (LON) substrate-binding domain 11 252 IPR003111 -
Tpr4g3871 886 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 779 787 IPR008268 GO:0004176|GO:0004252|GO:0006508
Tpr4g3871 886 ProSiteProfiles Lon proteolytic domain profile. 691 876 IPR008269 GO:0004176|GO:0004252|GO:0006508
Tpr4g3871 886 Gene3D - 543 682 - -
Tpr4g3871 886 TIGRFAM lon: endopeptidase La 13 874 IPR004815 GO:0004176|GO:0005524|GO:0006508
Tpr4g3871 886 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 1 886 - -
Tpr4g3871 886 MobiDBLite consensus disorder prediction 73 98 - -
Tpr4g3871 886 ProSiteProfiles Lon N-terminal domain profile. 11 252 IPR003111 -
Tpr4g3871 886 MobiDBLite consensus disorder prediction 73 89 - -
Tpr4g3871 886 SUPERFAMILY Ribosomal protein S5 domain 2-like 694 874 IPR020568 -
Tpr4g3871 886 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 407 426 - -
Tpr4g3871 886 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 694 710 - -
Tpr4g3871 886 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 776 795 - -
Tpr4g3871 886 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 806 825 - -
Tpr4g3871 886 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 829 847 - -
Tpr4g3871 886 Pfam ATPase family associated with various cellular activities (AAA) 403 540 IPR003959 GO:0005524|GO:0016887
Tpr4g3871 886 PIRSF Lon_proteas 1 635 IPR004815 GO:0004176|GO:0005524|GO:0006508
Tpr4g3871 886 PIRSF Lon_proteas 651 877 IPR004815 GO:0004176|GO:0005524|GO:0006508
Tpr4g3871 886 Gene3D - 693 878 IPR014721 -
Tpr4g3871 886 SUPERFAMILY PUA domain-like 10 251 IPR015947 -
Tpr4g3871 886 Pfam Lon protease (S16) C-terminal proteolytic domain 668 874 IPR008269 GO:0004176|GO:0004252|GO:0006508
Tpr4g3871 886 SMART lon_5 10 252 IPR003111 -
Tpr4g3871 886 CDD AAA 384 545 - -
Tpr4g3871 886 Gene3D - 1 160 IPR046336 -
Tpr4g3871 886 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 1 886 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Tpr4g3871 886 SMART AAA_5 399 544 IPR003593 -
Tpr4g3871 886 Gene3D - 162 295 - -
Tpr4g3871 886 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 886 IPR027501 GO:0004252|GO:0006515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3871 Tpr-Chr4 44911799 44924827 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3871 K01338 - gmx:100789982 1551.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3871 4 44911799 44924827 Tpr4g3871 4 44911799 44924827 ECH