Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3823 ATGCAGCTCCAAGAAAACATGGTACCAATGAAAGTAATGACTATGGTTATGATTTATCTATTTATCTTATCTTCTTTATTCATTATATCAAGTGCAAAAATATCAGGACAACCAGGAGTGAACTATGGAGAACTAGGTAACAACCTTCCAACACCAACAACCTCAGTGTCTCTCATCAAAAACCTAAACGCCAAACGCGTAAAAATCTACGACGCAAACCCAAAAATCCTCAAAGCACTCAAAAACACCGGAATCCAAGTATCCATCATGCTCCCCAATGAACTTGTAACCAATGTATCTTCTAACCAAACACTTGCAAACCAATGGATCCAATCCAACGTTGTTCCCTTTTATCCAAAGACACTTATTCGGTATCTCCTCGTCGGTAATGAACTCATCTCCTCAACATCAAATCAAACATGGCCCCATATTGTACCGGCTATGCACCGGATCAAACACTCCTTAACTACCTTTCATTTGCATAAAATTAAAGTTGGAACCCCTTTGGCAATGGATGTTTTACAAACATCATTTCCACCTTCAAATGGAACTTTTAGAAATGACATTGCTTTGAGTGTTATCAAACCAATGTTAGAGTTTTTACATGCCACAAACTCTTTTTTCTTCATAGATGTGTATCCATTTTTTGCTTGGGTTTCGGATCCTATTAATATTAACTTGGATTATGCTCTTTTTGAATCCAAAAACATCACGGTTAAAGATTCGGGTACGGGTTTGGTTTATACTAATTTGTTTGATCAAATGGTGGATGCAGTTTATTTTGCAATGGAGCGGCTTGGGTTTCCGGGTATTCGAATATTTATTGCTGAAACGGGTTGGCCTAATGGTGGTGATTTGGACCAAATTGGTGCAAATATTCACAATGCTGCCACATATAATAGAAATTTTGTGAAGAAAGTCACAAAAAAACCTCCTACCGGGACACCGGCTCGACCAGGTTCAATTCTTCCATCTTTTATATTTGCTTTGTATAATGAGAACTTGAAAACGGGTTTGGGAACAGAGCGTCACTTTGGGTTGTTGTACCCGAATGGTTCAAGTATTTACAAGATTGACCTTTCTGGCAAGACACCGGAGTCAAAGTTTAAGCCATTGCCACCACCAAGGGATTATAAAGGGAAGGCTTGGTGTGTGGTGGCGGAGGGAGCAAATGAGACGGCAGTGGTGGAGGCGCTGTCACACACTTGCTCGCAGGGAAACCAAACATGTGATTCGATTCAACCCGGAAAACCCTGTTTTAAACCCGATTCGGTGGTGGCTCATGCTAGCTATGCATTTAGTTCTTATTGGTCTCAGTTTAGACATCTTGGTGGAGCATGTAACTTCAACGGTCTCGCCACCCAAATTGCAAAGGATCCAAGTTATGGATCATGCAAGTATCCAAGTGTGACTCTTTGA 1419 0.4052 MQLQENMVPMKVMTMVMIYLFILSSLFIISSAKISGQPGVNYGELGNNLPTPTTSVSLIKNLNAKRVKIYDANPKILKALKNTGIQVSIMLPNELVTNVSSNQTLANQWIQSNVVPFYPKTLIRYLLVGNELISSTSNQTWPHIVPAMHRIKHSLTTFHLHKIKVGTPLAMDVLQTSFPPSNGTFRNDIALSVIKPMLEFLHATNSFFFIDVYPFFAWVSDPININLDYALFESKNITVKDSGTGLVYTNLFDQMVDAVYFAMERLGFPGIRIFIAETGWPNGGDLDQIGANIHNAATYNRNFVKKVTKKPPTGTPARPGSILPSFIFALYNENLKTGLGTERHFGLLYPNGSSIYKIDLSGKTPESKFKPLPPPRDYKGKAWCVVAEGANETAVVEALSHTCSQGNQTCDSIQPGKPCFKPDSVVAHASYAFSSYWSQFRHLGGACNFNGLATQIAKDPSYGSCKYPSVTL* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3823 472 Pfam Glycosyl hydrolases family 17 39 359 IPR000490 GO:0004553|GO:0005975
Tpr4g3823 472 Gene3D Glycosidases 38 367 - -
Tpr4g3823 472 Pfam X8 domain 383 454 IPR012946 -
Tpr4g3823 472 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 23 464 IPR044965 GO:0004553|GO:0005975
Tpr4g3823 472 SUPERFAMILY (Trans)glycosidases 39 359 IPR017853 -
Tpr4g3823 472 SMART X8_cls 382 467 IPR012946 -
Tpr4g3823 472 Gene3D - 378 470 - -
Tpr4g3823 472 PANTHER BNAC03G35190D PROTEIN 23 464 - -
Tpr4g3823 472 ProSitePatterns Glycosyl hydrolases family 17 signature. 271 284 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3823 Tpr-Chr4 44282897 44285688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g3823 34 472 Glycoside Hydrolase AT3G23770 53.483 9.35e-180 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3823 - - ccaj:109805358 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3823 4 44282897 44285688 Tpr4g3823 4 44282897 44285688 ECH