Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g3783 ATGCCTACCATCGGTGTAGGGCGAGATCTTCTTTTCGCGGCTCTTGGAAAAACTTACACACAAGAGGAATTTGAAGACTTGTGCTTCGATTTTGGGATTGAGCTCGATGATGTTACTACGGAGAAAGCAATTGTGAGAAAAGAGAAGCATTTGGAAGAAGAAGCTGATGAGGATGAAGAAGTTATCTACAAAATTGATATTCCTGCGAATAGATATGACCTACTCTGCCTTGAAGGACTGGCTCAAGCCCTCCGAGTTTTCTGCGGGATCCAGGAAATCCCTACTTACAAATTGGCTGACATTAGTAAGGATGCAATGCTTAAAATGCATGTGAAGCCAGAGACATCTTTGATTCGTCCCTTTGTTGTATGTGCCGTATTAAGAGGTTTAACTTTTGATAAAGCGAGATACAACAGCTTTATTGATCTACAAGACAAGCTGCACCAAAATATTTGTCGGAGAAGAACCCTTGTTGCCATCGGCACTCATGATCTGGATAAATTAGAGGGTCCTTTTACCTATGAGGCTTTACCACCTTCAAGTATTAACTTTACGCCTCTAAAACAGGAAAGGAGCTTCAGGGCTGATGAGCTCATGGAGTTCTACAAATCAGATTTGAAACTGAAGAAATTCTTGCATATAATCGAGGACTCCCCCGTTTATCCTGTTATATATGATAGTAAGAGAACTGTTTTATCTTTACCCCCAATTATCAATGGTGCACATTCAGCCATCACTTTGGAGACAAAGAATGTATTCATTGAATGCACTGCAACTGATCTGACAAAGGCGAAAGTTGTTTTAAATACAATGGTAACAGCCTTCGCGGAATATTGTGAAAATAAGTTTGTCATTGAACCTGTTGAAGTGATTTCTTCTGATGGAAAATCTCACATATACCCTGATTTATCTGTCCACACTATGGAAGTTCCTCTATCATACATTAATGGACGGATTGGAATATCGTTGGAGGCAGAAGAGGTTACCAAGCTCTTATACCGGATGCAATTGTATGCCAAGCAATCTACATCTGACAATAAACAGTCCAACATAATTGTATCGGTACCTCCTACTAGAAGTGATGTTCTTCATCCATGTGATGTTTCGGAGGATGTTGCGATAGCTTATGGATTCAATGCAATTATGGATCAAGCAATAGTCGATAATAACGCGTCAAATAGATTAGCAGCTTCCTTGACACTACTTCCTCTTAATGAGATGAGTGATCTAATCAGAAAAGAGGTTGCAATGGTTGGGTTCACAGAGGTGTTAACATTCATACTCTGCTCTAAGAAAGAAAACTTTTCCATGCTAAACCGCAAAGATGATAAATCCAAAGCGGTTATCATTGGAAACCCCAGGTCTTCAGACTTCGAGGCTGTCCGGACTACTCTTATGCCTGGTATTTTGAAAACTGTTGCTCACAACAAGGATCACCCAAAACCCATAAAGATTTTTGAAGTGGGTGATATAGCTATTTTGGATGACAATGATGTTGGTGCAAAAAATCTCCGCCAATTTGCTGCACTACACTGTGGTGCTCATGCAGGATTGGAGATAATTCATGGCTTGGTGGACAAAGTAATGGAAAAGAATGGGATTACCTTCTCACCTGGTGATAAATCAGGAGGGTATTATATTGAGGAGTCAGATGAGCCCGAGTTTTTTGCTCGTAGACAAGCAAGAATTATTTATAAGGGAAAGCAAATAGGGATTTTTGGCATTGTTGATCCGGAGGTATTAAAAAACTTCGACATTACGGATCCCTGCTCCTTTGTTGAACTCAACATTGAAAGTTTCTTGTAA 1806 0.3998 MPTIGVGRDLLFAALGKTYTQEEFEDLCFDFGIELDDVTTEKAIVRKEKHLEEEADEDEEVIYKIDIPANRYDLLCLEGLAQALRVFCGIQEIPTYKLADISKDAMLKMHVKPETSLIRPFVVCAVLRGLTFDKARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDKLEGPFTYEALPPSSINFTPLKQERSFRADELMEFYKSDLKLKKFLHIIEDSPVYPVIYDSKRTVLSLPPIINGAHSAITLETKNVFIECTATDLTKAKVVLNTMVTAFAEYCENKFVIEPVEVISSDGKSHIYPDLSVHTMEVPLSYINGRIGISLEAEEVTKLLYRMQLYAKQSTSDNKQSNIIVSVPPTRSDVLHPCDVSEDVAIAYGFNAIMDQAIVDNNASNRLAASLTLLPLNEMSDLIRKEVAMVGFTEVLTFILCSKKENFSMLNRKDDKSKAVIIGNPRSSDFEAVRTTLMPGILKTVAHNKDHPKPIKIFEVGDIAILDDNDVGAKNLRQFAALHCGAHAGLEIIHGLVDKVMEKNGITFSPGDKSGGYYIEESDEPEFFARRQARIIYKGKQIGIFGIVDPEVLKNFDITDPCSFVELNIESFL* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g3783 601 Pfam Phe-tRNA synthetase beta subunit B1 domain 1 89 IPR040659 -
Tpr4g3783 601 TIGRFAM pheT_arch: phenylalanine--tRNA ligase, beta subunit 23 601 IPR004531 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Tpr4g3783 601 Pfam tRNA synthetase B5 domain 308 378 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Tpr4g3783 601 Gene3D Bira Bifunctional Protein; Domain 2 402 601 IPR045864 -
Tpr4g3783 601 Pfam B3/4 domain 119 280 IPR005146 GO:0003723|GO:0004826
Tpr4g3783 601 Gene3D - 100 304 IPR020825 -
Tpr4g3783 601 SMART B5_2 305 378 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Tpr4g3783 601 Gene3D - 1 88 - -
Tpr4g3783 601 SUPERFAMILY Class II aaRS and biotin synthetases 375 600 IPR045864 -
Tpr4g3783 601 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 403 597 IPR041616 -
Tpr4g3783 601 SUPERFAMILY Putative DNA-binding domain 306 381 IPR009061 -
Tpr4g3783 601 Gene3D - 305 381 - -
Tpr4g3783 601 CDD PheRS_beta_core 403 600 IPR041616 -
Tpr4g3783 601 ProSiteProfiles B5 domain profile. 303 383 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Tpr4g3783 601 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 1 601 IPR045060 GO:0004826|GO:0006432
Tpr4g3783 601 PANTHER PHENYLALANINE--TRNA LIGASE BETA SUBUNIT 1 601 - -
Tpr4g3783 601 SMART B3_4_2 118 280 IPR005146 GO:0003723|GO:0004826
Tpr4g3783 601 SUPERFAMILY PheT/TilS domain 221 282 - -
Tpr4g3783 601 SUPERFAMILY Putative DNA-binding domain 6 94 IPR009061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g3783 Tpr-Chr4 43733562 43743083 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g3783 K01890 - gmx:100805249 1043.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g3783 4 43733562 43743083 Tpr4g3783 4 43733562 43743083 ECH