Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2561 ATGGCTGTTTCAACTAGTTTCTATGGTCCAAAATTGGAACCTTTGTTCATCAAATATTGTTCTTCTTCTTCTTCATCATTATCTTATGTTACTACTCATCTATCATTCTTTGGTAGAAACAGAAAGAGCCTTGTTCAGTGTCAGAGAGGTTCAATTATTCGATGTGAGGCTTCGTCTTCTGATAATGCTAACTCTGTTTCTGCTCTACAACAGCTTAAAACTTCTGCTGCTGATAGATACACAAAGGAAAAGAGCAGCATTGTGGTAATTGGGCTAAGTGTTCATACTACGCCGGTCGAAATGCGTGAGAAACTTGCCATACCAGAAGCAGAATGGCCTAGAGCCATTGGTGAGCTTTGTAATCTGAATCATATTGAAGAAGCAGCTGTTCTGAGCACATGCAACAGAATGGAAATATACGTTGTTGCACTTTCTCAACACCGCGGTGTCAAAGAAGTCACTGAATGGATGTCAAATACAAGTGGTATACCTGCATCAGAGCTTTCAAAGTACCTATTTTTGCTATACAACAAAGATGCAACACATCACATTTTTGAAGTATCAGCAGGACTTGATTCTCTTGTAATGGGAGAAGGTCAAATCCTTTCACAAGTCAAGCAAGTTGTGAAAGCAGGACAAGGAGTTAATGGCTTTGGAAGAAACATCAGTGGTCTATTCAAGCACGCAATCACCGTCGGTAAAAGGGTCCGAACTGAGACTAACATTGCGGCCGGCGCAGTTTCCGTGAGTTCGGCTGCGGTTGAATTGGCCTTGATGAAGTTACCTGATCAAGCCTCACATGGAAATGCAAGAATGCTAGTTATCGGAGCTGGAAAAATGGGGAAGCTTGTGATTAAGCATTTAGTTGCAAAAGGGTGTAAGAAGATGGTAGTTGTTAATCGAACCGAAGAGAGAGTCGCAGCGATCCGCGAAGAAATGAGTGATGTTGAGATAATCTACAGACCGCTTTCGGAAATGTTCGAATGTGTCGGCGAAGCAGATGTAGTTTTCACCAGCACTGCATCAGAGAATCCTTTGATTTTGAAAGAACATGTTAATGAACTTCCTTTAGCAAGCGAAGAAGTCGGACAGAAACGCCTCTTTGTCGACATTTCTGTTCCGAGAAACGTCGGTTCATGTGTCAATGACATTGAGTCTGTGAAAGTTTACAATGTTGATGATCTTAAAGAGGTTGTAGCTGCTAACAAAGAAGATAGGTTAAGAAAAGCAATGGAAGCACAAGTAATTATCGACGAAGAATCGACACAATTTGAAGCATGGAGAGACTCATTAGAAACTGTTCCTACCATTAAGAAATTAAGGGCTTATGCTGAAAGATTAAGGGTTGCTGAGCTTGAGAAATGTTTAGGCAAAATGGGTGATGATATTAATAAGAAAACACAAAAAGCTGTGGATGATCTTAGTAAAGGGATTGTGAATAAAATGCTTCATGGTCCAATGCAACATTTAAGATGTGATGGAAGTGATAGTAGGACTTTGAGTGAGACACTTGAGAATATGCATGCTTTGAATAGAATGTTTAGTCTTGAAACTGAGATTTCTGTTTTGGAACAGAAGATTAGAGCTAAGGTGGAGCAAAAACCATAG 1608 0.4017 MAVSTSFYGPKLEPLFIKYCSSSSSSLSYVTTHLSFFGRNRKSLVQCQRGSIIRCEASSSDNANSVSALQQLKTSAADRYTKEKSSIVVIGLSVHTTPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSNTSGIPASELSKYLFLLYNKDATHHIFEVSAGLDSLVMGEGQILSQVKQVVKAGQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPDQASHGNARMLVIGAGKMGKLVIKHLVAKGCKKMVVVNRTEERVAAIREEMSDVEIIYRPLSEMFECVGEADVVFTSTASENPLILKEHVNELPLASEEVGQKRLFVDISVPRNVGSCVNDIESVKVYNVDDLKEVVAANKEDRLRKAMEAQVIIDEESTQFEAWRDSLETVPTIKKLRAYAERLRVAELEKCLGKMGDDINKKTQKAVDDLSKGIVNKMLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEISVLEQKIRAKVEQKP* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2561 535 ProSitePatterns Glutamyl-tRNA reductase signature. 183 206 IPR018214 GO:0008883
Tpr4g2561 535 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 410 496 IPR036453 GO:0008883|GO:0033014|GO:0050661
Tpr4g2561 535 Coils Coil 299 319 - -
Tpr4g2561 535 Gene3D - 246 399 - -
Tpr4g2561 535 CDD NAD_bind_Glutamyl_tRNA_reduct 87 410 - -
Tpr4g2561 535 PANTHER GLUTAMYL-TRNA REDUCTASE 1 534 - -
Tpr4g2561 535 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 86 242 IPR036343 GO:0008883|GO:0033014|GO:0050661
Tpr4g2561 535 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 1 534 - -
Tpr4g2561 535 Pfam Shikimate / quinate 5-dehydrogenase 257 398 IPR006151 -
Tpr4g2561 535 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 245 406 IPR036291 -
Tpr4g2561 535 TIGRFAM hemA: glutamyl-tRNA reductase 87 496 IPR000343 GO:0008883|GO:0033014|GO:0050661
Tpr4g2561 535 Gene3D - 85 245 IPR036343 GO:0008883|GO:0033014|GO:0050661
Tpr4g2561 535 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 90 240 IPR015895 GO:0008883|GO:0033014|GO:0050661
Tpr4g2561 535 Hamap Glutamyl-tRNA reductase [hemA]. 86 514 IPR000343 GO:0008883|GO:0033014|GO:0050661
Tpr4g2561 535 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 412 516 IPR015896 GO:0008883|GO:0033014|GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2561 Tpr-Chr4 27984834 27987894 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2561 K02492 - gmx:100815985 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2561 4 27984834 27987894 Tpr4g2561 4 27984834 27987894 ECH