Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2554 ATGAATTTGCATGCCATGGTTTCTCTACCTTCCTCACTTTCTGTCACTGCAACTCTTAACCTCCAACCACAATTCAGAAAATACCCACCAACCACTTTTCCACTAGATAAGGGACAAAGCATTTCATTACAGAAAAGCCACATATCCACACATTTGAATCCCAGTAGGCACCTTAATTTTCAAGAAGCACTTTCATTTGCAAAAGAATGTAAAGAGGAAGTGGATTCATCTTTCTACATTCCCTTGTTACAACAATGCTCACAAAACTGCTCCTTTTCATCCACACAAATTATTCACTGTCACATAGTGAAAACAGGTAACCATGAAGACCCTTTTTTGTCAACATTTCTAATCAGCGTTTATGCCAAATGCGGTAACATAGAGGATTCTAAAAGAGCATTTGATCACTTGAACAGCAGAAATGTTATTGCTTGGACAAATTTAATGAAGGGTTATGTACAAAACTCAATGCCAATACATGCTGTACATTTGTTTCAAGAGATGTTACATTCAGAATGTTACCCTTCAATTTACACTCTTGCTATAGCCATTAATGCTTGTACATCTTTGCACTCTTTGAAGTTAGGAGAACAGTTACATGCTTACATAATCAAATACAATGTTGATTTTGACACAAGTATCGGCAATGCACTTTGTAGTTTATACTCTAAATGTGGTGGTAGGTTGGAATTTGGTCTAAAAGCATTTAGGAGAATCAAAGAAAAAGATGTTATTTCTTGGACTGCTGCGATTTCTGCTTGCGGCGAAAATGGTGAAGCTATGAAGGGTTTGAGAGTTTTTGTTGAGATGCTTTTAGATGAAGTTTGGGTTGAGCCTAATGAGTACACTTTAACTACTGTGTTGACTCAGTGTTGTGAGGTTAAGTGCTTGGAGCTTGGCGTTCAGGTTCATTCTTTGTGTACTAAATTAGGGTACGAATCGAACCTACGCGTTCAAAATTCTTTATTGTATTTGTACATTAAATGTGGTTGTATCGGTGAAGCTCAAAGGGTTTTTAAAGGAATGGATGCTGTCAATTTGATTACATGGAATGCTATGATTGCTGGATTTGCACAAATGATGGAACTTTCAAAGGATAATCTTTCTGCATACCGAATTGGAAGTGAAGCACTCAAACTTTTCTCCGAGTTGAATCAGTCTGGCATGAAACCTGATTCGTTTACGCTCTCAAGTGTGTTGAGTGTTTGTAGTAGAATGATGGCTTTAGAACAAGGAGAACAGATTCATGCTCGGATGATCAAAACTGGGTTGGTGTCAGACGATGTTGTAGGTTCTTCTTTGGTTAATATGTATAACAAATGTGGAAGCATCGAGAGAGCAAGCAAAGCTTTTCTAGAGATGTCCATTAGAACAATGATATTATGGACTTCCATGATTAATGGTTTTGCACAGCATGGTTGGTCAAAGCAAGCATTGAATCTTTTCGAAGATATGAAACTTGTAGGAGTTAGACCAAACCAGGTCACTTTTGTCGGCATTTTATCGGCCTGTGGAAATGCTGGTATGACCAATGAAGCATTCAATTACTTTAAGATTATGCAAAAGGAATATAAAATTAAACCTTTGATGGACCATTATGCTCGTTTGGTTGATATGTTAGTGAGGCTCGGTCGGCTAGAGGAAGCTTTCAATTTGATAAAAAAAATGGATTATGAAGCTAGTGAGTTTATTTGGTCGAATTTGTTAGCTGGTTGTTTAAGCCAAGGGAATCTAGAATTGGGATGTCATGCTGCAGAAAAGTTATTAAGTCTCAAACCAAAAGATGTAGAGACATACGGATTGTTGTTGAATACGTACGCCTCAGCCGGGAGATTCGATGAAGTTTCTAAAGTGAAGAATATAATGAAAGAAGAGAAAGTTAAAAAGTTAAAGGACTGGAGCTGGATTAGCATCAAAGACAGAGTGTATTCATTTGAAACAAATGATAAGGCACACATAGAGAGTTCACTAGTAAATAAATCATTGGAGGATTTACTTGTGAAAGCAAAGAATCTTGGATATGAGATGTTAGAAAGTGTGGAAATATGTGACAAAGAAGAGGATGAAAAGACATCTTCCCCTAGCATTTATCACAGTGAGAAACTAGCCATTACATTTGGGTTGGAGAATTTGCCAAATTCTTCACCAATAAGAGTTGTTAAGAATACCTTAATGTGCAGGGATTGCCATAATTTTATGAAGTATATCTCAACACTGACTAGTAGGGAAATCATTGTTAAAGATAGTAAGAGGCTACATAAATTTGTCAATGGACAATGCTCTTGTGGGAATGTTGGTGGGTTTCTCTGA 2310 0.3701 MNLHAMVSLPSSLSVTATLNLQPQFRKYPPTTFPLDKGQSISLQKSHISTHLNPSRHLNFQEALSFAKECKEEVDSSFYIPLLQQCSQNCSFSSTQIIHCHIVKTGNHEDPFLSTFLISVYAKCGNIEDSKRAFDHLNSRNVIAWTNLMKGYVQNSMPIHAVHLFQEMLHSECYPSIYTLAIAINACTSLHSLKLGEQLHAYIIKYNVDFDTSIGNALCSLYSKCGGRLEFGLKAFRRIKEKDVISWTAAISACGENGEAMKGLRVFVEMLLDEVWVEPNEYTLTTVLTQCCEVKCLELGVQVHSLCTKLGYESNLRVQNSLLYLYIKCGCIGEAQRVFKGMDAVNLITWNAMIAGFAQMMELSKDNLSAYRIGSEALKLFSELNQSGMKPDSFTLSSVLSVCSRMMALEQGEQIHARMIKTGLVSDDVVGSSLVNMYNKCGSIERASKAFLEMSIRTMILWTSMINGFAQHGWSKQALNLFEDMKLVGVRPNQVTFVGILSACGNAGMTNEAFNYFKIMQKEYKIKPLMDHYARLVDMLVRLGRLEEAFNLIKKMDYEASEFIWSNLLAGCLSQGNLELGCHAAEKLLSLKPKDVETYGLLLNTYASAGRFDEVSKVKNIMKEEKVKKLKDWSWISIKDRVYSFETNDKAHIESSLVNKSLEDLLVKAKNLGYEMLESVEICDKEEDEKTSSPSIYHSEKLAITFGLENLPNSSPIRVVKNTLMCRDCHNFMKYISTLTSREIIVKDSKRLHKFVNGQCSCGNVGGFL* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2554 769 Pfam E motif 577 636 IPR046848 -
Tpr4g2554 769 Pfam PPR repeat family 140 187 IPR002885 -
Tpr4g2554 769 Pfam PPR repeat family 460 504 IPR002885 -
Tpr4g2554 769 Gene3D Tetratricopeptide repeat domain 55 193 IPR011990 GO:0005515
Tpr4g2554 769 Pfam PPR repeat 245 271 IPR002885 -
Tpr4g2554 769 Pfam PPR repeat 536 556 IPR002885 -
Tpr4g2554 769 Pfam PPR repeat 320 342 IPR002885 -
Tpr4g2554 769 Gene3D Tetratricopeptide repeat domain 366 517 IPR011990 GO:0005515
Tpr4g2554 769 Gene3D Tetratricopeptide repeat domain 518 693 IPR011990 GO:0005515
Tpr4g2554 769 Gene3D Tetratricopeptide repeat domain 194 308 IPR011990 GO:0005515
Tpr4g2554 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Tpr4g2554 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
Tpr4g2554 769 SUPERFAMILY TPR-like 436 615 IPR011990 GO:0005515
Tpr4g2554 769 TIGRFAM PPR: pentatricopeptide repeat domain 144 176 IPR002885 -
Tpr4g2554 769 TIGRFAM PPR: pentatricopeptide repeat domain 461 493 IPR002885 -
Tpr4g2554 769 TIGRFAM PPR: pentatricopeptide repeat domain 495 528 IPR002885 -
Tpr4g2554 769 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 70 706 - -
Tpr4g2554 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 595 629 IPR002885 -
Tpr4g2554 769 PANTHER OS01G0913400 PROTEIN-RELATED 70 706 - -
Tpr4g2554 769 Pfam DYW family of nucleic acid deaminases 682 764 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2554 Tpr-Chr4 27867190 27871213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2554 79 764 Glycoside Hydrolase AT3G49170 34.150 5.90e-137 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2554 - - mtr:MTR_5g067140 1305.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2554 4 27867190 27871213 Tpr4g2554 4 27867190 27871213 ECH