Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2552 ATGGCTATGGCTCTTCGCAGACTCACATCCTCCATCAACAACACCGCTTCTCTTTATCGCATGTCATCTTCTTCTCTCTCCGCACAACAGAAGAATCACAAATCTCATCCCGATTGGATTAAGCAGCTAAACGATCCTCTTGAAGTGGTGGATCCTGAGATCGAAGATATTATCGAACTCGAAAAATCTCGTCAATGGAAGGGACTAGAACTTATACCTTCAGAAAATTTTACATCTTTGTCGGTTATGCAAGCGGTTGGATCAGTTATGACGAATAAATACAGTGAAGGTTATCCAGGTGCTAGATACTATGGTGGAAATGAGTACATTGACATGGCTGAGACCTTGTGTCAGAAGCGTGCATTGGAAACTTTTGGGTTGGATCCAGCAAAATGGGGAGTCAATGTGCAGTCATTATCTGGATCCCCTTCTAACTTCCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCACTCGATCTTCCCCATGGTGGGCATCTATCACATGGATATCAGACTGACACCAAGAAGATATCAGCTGTATCTATATTCTTTGAAACAATGCCATACAGATTGGACGAGAGCACTGGTTATATTGATTATGACCAGATGGAGAAAAGTGCTGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCCCGTCTTTATGATTATGCACGGATTCGCAAGGTCTGTGATAAACAAAAGGCAGTTATGTTGGCTGATATGGCACACATCAGTGGATTAGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTACGCTGATGTTGTAACAACCACAACACATAAGTCACTTCGTGGGCCACGTGGGGCTATGATATTCTTCAGGAAGGGCGTGAAAGAGATAAACAAGAAAGGGCAGGACGTGTTGTATGACTACGAAGACAAAATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCCCACAATCACACTATTACAGGCTTAGCAGTTGCACTGAAGCAGGCTATGACACCAGAATTCAAGAATTATCAAAAACAAGTTCTGAGTAACTCCTCAGCATTTGCACAGAGTTTGTTAGAGAAAGGCTATGACCTTGTATCTGGTGGAACTGAGAACCATTTGGTGTTGGTGAACCTAAGAAACATGGGCATTGATGGCTCACGGGTTGAAAAGGTGTTAGAATCAGTCCATATAGCTGCCAATAAAAATACTGTTCCAGGGGATGTGTCTGCTATGGTTCCTGGGGGCATCAGAATGGGAACCCCTGCTCTCACATCCAGGGGTTTTATTGAGGGCGATTTTAAAAAAGTTGCTGACTACTTTGATGTGGCAGTCAAAATAGCCTTACAGATTAAGGAAAATTCAAAAGGTACAAAGTTGAAAGATTTTGTGGAAGCTATGCAGTCAGATGCACAAATTCAATCTCAAATTGCTAATCTCCGCCGTGAAGTAGAAGATTATGCTAAGCAGTTTCCCACAATCGGTTTTGAGAAAGAGACAATGAAGTATAATAAGTGA 1530 0.4196 MAMALRRLTSSINNTASLYRMSSSSLSAQQKNHKSHPDWIKQLNDPLEVVDPEIEDIIELEKSRQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALETFGLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSAALFRPKLIVAGASAYARLYDYARIRKVCDKQKAVMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKKGQDVLYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQKQVLSNSSAFAQSLLEKGYDLVSGGTENHLVLVNLRNMGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFIEGDFKKVADYFDVAVKIALQIKENSKGTKLKDFVEAMQSDAQIQSQIANLRREVEDYAKQFPTIGFEKETMKYNK* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2552 509 Pfam Serine hydroxymethyltransferase 47 444 IPR039429 -
Tpr4g2552 509 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 270 286 IPR019798 GO:0030170
Tpr4g2552 509 SUPERFAMILY PLP-dependent transferases 31 500 IPR015424 -
Tpr4g2552 509 Coils Coil 474 494 - -
Tpr4g2552 509 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 5 508 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Tpr4g2552 509 Gene3D - 76 349 IPR015421 GO:0003824
Tpr4g2552 509 PIRSF SHMT 27 504 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Tpr4g2552 509 PANTHER SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL 5 508 - -
Tpr4g2552 509 Gene3D Aspartate Aminotransferase, domain 1 51 496 IPR015422 GO:0003824
Tpr4g2552 509 Hamap Serine hydroxymethyltransferase [glyA]. 46 499 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Tpr4g2552 509 CDD SHMT 50 471 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2552 Tpr-Chr4 27846242 27853826 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2552 K00600 - gmx:100816213 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2552 4 27846242 27853826 Tpr4g2552 4 27846242 27853826 ECH