Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2544 ATGGCGACGTTCGAACTTTATCGTAGGTCGGAGATCGGAACATGCCTTACTGAGACTTTGGATGAGATGGTTCAGGCTGGAACTCTTAGTCCTGAGCATGCGATTCAGATTCTTGTTCAGTTTGATAAGTCTATGACTGAGGCTCTGGAAACGAAGGTTAGGAGCAAAGTTTCTATCAAGGGACATCTCCATACATACAGATTTTGCGACAATGTTTGGACCTTCATCTTGCAAGATGCTTTGTTTAAGAATGAAGACAAGCAAGAGACTGTTGGACGGGTTAAAATAGTGGCATGTGACTCAAAGTTGCTCAATCAATAA 321 0.4237 MATFELYRRSEIGTCLTETLDEMVQAGTLSPEHAIQILVQFDKSMTEALETKVRSKVSIKGHLHTYRFCDNVWTFILQDALFKNEDKQETVGRVKIVACDSKLLNQ* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2544 106 Pfam Transcription initiation factor IIA, gamma subunit 60 101 IPR015871 GO:0005672|GO:0006367
Tpr4g2544 106 CDD TFIIA_gamma_C 57 102 IPR015871 GO:0005672|GO:0006367
Tpr4g2544 106 PANTHER TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 1 106 IPR003194 GO:0005672|GO:0006367
Tpr4g2544 106 CDD TFIIA_gamma_N 4 51 IPR015872 GO:0005672|GO:0006367
Tpr4g2544 106 Pfam Transcription initiation factor IIA, gamma subunit, helical domain 4 49 IPR015872 GO:0005672|GO:0006367
Tpr4g2544 106 Gene3D - 3 54 IPR009083 GO:0005672|GO:0006367
Tpr4g2544 106 SUPERFAMILY Transcription factor IIA (TFIIA), beta-barrel domain 52 102 IPR009088 GO:0005672|GO:0006367
Tpr4g2544 106 Gene3D - 55 105 IPR009088 GO:0005672|GO:0006367
Tpr4g2544 106 PANTHER TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 1 106 - -
Tpr4g2544 106 SUPERFAMILY Transcription factor IIA (TFIIA), alpha-helical domain 4 54 - -
Tpr4g2544 106 PIRSF TFIIA_gamma_hum 1 106 IPR003194 GO:0005672|GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2544 Tpr-Chr4 27737731 27741550 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2544 K03123 - fve:101306952 194.126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2544 4 27737731 27741550 Tpr4g2544 4 27737731 27741550 ECH