Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2538 ATGGATTTTGAAACTCTTCATACTATCTTAGCAAAATCACTCACCGTCATTTCCTGGCCTCCAATTATTTTGCTTTGTCCTTTATATGTTTCTATTAGGGCATTGGAGAGTGATTGTCGTTCCAGTAATCAACGATGTCTTGCTTTTTGGGTTCTGTTTTCTTTCTCTATGATCATGGAATATGAACTTCAAATTTTGCTTAGTTGGTTCCCATGGTGGCCTCATGTGAAAGCTACGGCAACTATCCTGCTGCTAATACCTTATTTTGGTGCTGCGACGTACATCTACAAGTTCTTAATTAAGCACTACTGTTCGTGGAACATATGTGGATGGACGCTGAACACCTTCCACCAGAAAATCACACATTTTGATTTGGACAACGATAGCAAAATACTTTCAGAGTCGGATGAGGGCAGACAAGTATTTTTGGAATCGGACGATAATAGCAAAAGTGTTGAGGTCTCTGGACAGACAATTATTACAAATCATTTACAAGAGGAGAAACTCTTGGTATATCAGGGAAAAGATGATCTTGCTGACTGTGACAAGACAAATACCGGTTATACAAGTAAAAAGAAAGTACAGAAGGAATGGAGTTGTGCTTTATGTCAAATTATTACTACAAGTGAAAATTGCTTAGGGTCACATCTTCAAGGGAAGCAACACAAGGCTAAGGAAAAAGAACTTCGAGTTGGGTTACATGCAACAAATATACCGTATGTTCTATCCTTTACGCAGGAAAGAATCAAAGGAATGGTTCTACTTAGGAATTTCAACCAAATTGCAAAGATACTGAGTCCAGTTTCTAGACCCATAATATGGTGTGAATGGCAAAAACCGGAATTTGGATGGACAAAACTAAATACGGACGGTTCCGTAAACAAAGTAACTGCTGGTTTTGGTGGTCTACTTCGTGATTACCGGGGAGAACCAATATGCGCGTTTGTCTCCAAAGCTCCACAAGGAGATACTTTCTTGGTTGAACTTTGGGCTATATGGAGAGGCCTTGTTCTCTCCATAGGTCTTGGGATTAAATCAATATGGGTGGAGTCAGATTCCATGAGTGTTGTGAAGACAATCAATAAAATGCAACATTGTCCGAAAGCTGAAACCTGTTTGATACAAATCTGGAAACTCTTGAGTAAGTTTGATGAGTATCGGATTTCTCACTCGTGGCGCGAAACTAATAGAGCAGCAGATCATCTTGCAAAGATGGCTCTTTGTGGAAATGATGTGGTTCTGTGGCCAGTTGATTTTTCACATAGCCTCTGCAATATCATTCAAGATGATGCCAGAGGAACGAAATATCCAAGACGGTGA 1320 0.3977 MDFETLHTILAKSLTVISWPPIILLCPLYVSIRALESDCRSSNQRCLAFWVLFSFSMIMEYELQILLSWFPWWPHVKATATILLLIPYFGAATYIYKFLIKHYCSWNICGWTLNTFHQKITHFDLDNDSKILSESDEGRQVFLESDDNSKSVEVSGQTIITNHLQEEKLLVYQGKDDLADCDKTNTGYTSKKKVQKEWSCALCQIITTSENCLGSHLQGKQHKAKEKELRVGLHATNIPYVLSFTQERIKGMVLLRNFNQIAKILSPVSRPIIWCEWQKPEFGWTKLNTDGSVNKVTAGFGGLLRDYRGEPICAFVSKAPQGDTFLVELWAIWRGLVLSIGLGIKSIWVESDSMSVVKTINKMQHCPKAETCLIQIWKLLSKFDEYRISHSWRETNRAADHLAKMALCGNDVVLWPVDFSHSLCNIIQDDARGTKYPRR* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2538 439 Pfam Reverse transcriptase-like 288 406 IPR002156 GO:0003676|GO:0004523
Tpr4g2538 439 Pfam TB2/DP1, HVA22 family 27 102 IPR004345 -
Tpr4g2538 439 SMART ZnF_U1_5 195 229 IPR003604 GO:0003676|GO:0008270
Tpr4g2538 439 SUPERFAMILY beta-beta-alpha zinc fingers 183 231 IPR036236 -
Tpr4g2538 439 CDD RNase_H_like 287 404 IPR044730 -
Tpr4g2538 439 PANTHER PROTEIN A, PUTATIVE ISOFORM 1-RELATED 11 439 - -
Tpr4g2538 439 PANTHER HVA22-LIKE PROTEINS 11 439 IPR004345 -
Tpr4g2538 439 SUPERFAMILY Ribonuclease H-like 284 414 IPR012337 -
Tpr4g2538 439 Gene3D - 284 407 IPR036397 GO:0003676
Tpr4g2538 439 Pfam Zinc-finger of C2H2 type 198 222 - -
Tpr4g2538 439 Gene3D Classic Zinc Finger 183 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2538 Tpr-Chr4 27645971 27650365 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2538 - - gmx:102661917 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2538 4 27645971 27650365 Tpr4g2538 4 27645971 27650365 ECH