Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2507 ATGCGTGTTACAGTGGATCTAGGGTTTTCTTCTTTGCTTTTCGCGGCTTTAATTTGTGTCATTTTGCCGGCGATCGGTTTCTTCATACGTTATAAGTGGCGGCGTGCGGCGGAGAGGGCGGAGGAGATTAAGAGACTGTTGATTCTCACGGCTGAGGAATCTGCCAGGGCTGAGCGTGAGGCGGCAGCTTCGTATCAATATGTTGTTGCTGCGAATTCGTATCAATATCAAAACGGTGCCGTTTCAGCTTCGTCTCAATACGTTTCACCGAATTCGCATCAAAACGGCGCCGCTTCGGTTGATAAGAGCAATCAATGTGTAGTGTGTTTTTCTCCCACCACTACAAGGTGTGCAAGGTGCAAAGCAGTTCATTACTGTTCTGGTAAGTGCCAAATTGCTCATTGGCGTCAAGGTCACAAAGACAAATGTCATCCTCCCAGCACAGCTCGCCAGACTGATGATTTGGTAAGCAATATTAGTAAGAAGCTAGCCAAGCCAGACCGTCGTGGATTCAATGATGAGAAGTCTCGGATTGAAAGTACAGAGATTACAAAATCCTCTGAGAAACCCCCATTGTCTGATATAAAACGTTCTCCCAAATTTTCTTGTGTAGGGACTGATAATGCTAGAGTTGAGTCTCCTGCAGAGGAAAATATCGCAGACTCTAATTCTGAATTATCATGTAACTCATTTTCTGGATTCTCTGCTTCCACTGGTGCTAATGGATCATCATCATCTGATGATTCATCTGTTTGTGAGAGTATCATATCAAATGAGCATGAGAGATCCGAGGGACCTATTTCTACTGACCACACTTTTGACGTCTCTGACAACACATCAAATGGTCATAGCATTGGTGCAACCATCCCATTGTCACCTAAGTTTGCTAGTTTGGTTGATTCAGCTAGACCTGGTATTGGTAAAGAAGAGATTAAGCTCACATCAAATGATAGTTCAGGTTTGATGATGCAGAAAGGGGGAACAGAGCCTTCTAAAGTGTCGTATGGATTTTGGAATGGCACTCTTGATTCAAATGGGGTAAAAGATGACTCTTTTGGTGACCCTCTTCTATCTCACTCTAATGAACCTGTTACGAAGTCTGTTGGGAAAAATATGCCAAACATAGGATTAGGATCTTCCAAGAATGAAGGTCTTGATTCTACTCGTTATACAGATGCTTCAAGCATCCATAACTTGCACACTGTTGGCTCTAAGGTATCAAATCATGTTGTGATCAACCCTGGAAGCAGCTTGAGATCTGCTGAAATTAGTTGTCTTCCATGTACATCTGCCGAAACTAAGTTAGTTTCTAGAGCTGTAGAGGAGGAGCATTTACATTACAGTTCAAAATTTATGAACAATGGTACCCATTCTGGCACTGGTAATTCATCCCAGGTTGCTAATTGCTCTCCAACTTCCAAGGATGGCCTTAAAACATCTGTTATGAAAGTTGTTGATCAGTTTAGAGGATCAAATATGTCCAAACACTTTCCAATAGCTGTTGGAAGTGATGTTGCTGTAAAATACAGTGAAAAGGGTCTTTTTCCATATGATTTGTTTATCAAACTTTATAACTCGAACAGAGTGGAGGTCCAACCATTTGGTCTTACAAATTGTGGAAACAGCTGTTATGCGAATGCTGTACTCCAGTGCTTGGTATTTACACCACCATTGACTGCATATTTGCTTCAAGGGCTTCATTCTAAATCATGTGTAAATAAAAAATGGTGTTTCATCTGTGAGTTTGAAAGTTTGATTTTGAAATCAAAAGACACAAAATCTCCCCTCTCACCTATAGGCATACTCTCTCAACTACAGAATATTGGAAGTCAACTTGGTAATGGAAGAGAAGAAGATGCGCATGAATTTCTAAGGCATGTGATTGAAACAATGCAATCTGTTTGTCTTATGGAATGTGAGGCTAATGCATCAGACTCATTAAAAGAACAAACTAATTTAGTGGGTCTTACATTTGGAGGGTACCTGCGATCAAAGATAAAATGCATGACATGTGGAGGGAAATCTGAGCGTCAAGAAAGGATGATGGATTTGACTGTTGAGATAGAAGGAGAGATAGCATCCTTGGAGGATGCCCTTAAACAGTTTACAAGCATCGAAACTCTGGATGGAGAAAACAAGTACCACTGTGTCAGATGTAAATCTTATGAGAAGGCCAAGAAGAAAATGGCAGTTTCAGAGGCACCTAATGTTCTTACTATAGCATTGAAGAGATTTCGGTCTGGAAAATATGGGAAGCTCAATAAGCCAATTCAGTTTCCTGAAATACTTGACTTAGCTCCTTTCATGAGTGGAACTAGTGATTTGGCTATATACAGGCTGTATGGGGTCGTTGTGCACTTGGATACAATGAATGCTTCTTATTCAGGTCACTATGTGTGTTATGTGAAGAATTTCCAGAACAGTTGGTTCAAGATTGATGACAGTGTGGTGACGCCTGTTGAATTGGAAACAGTATTAACAAAAGGCGCATACATGCTTCTTTATGCTAGGTGCTCACCTAGGGCCCCAAGATTAATCAGGAACATGATAGTGTCCTCAGATTCAAAAACCAAATTGAATGGAAAAACTATCATAATGAAGTACAAACATGCATCAACACATTCTGGTTCCACTGAATACATGACTAATTCAGTTTCTGGTACATATGATTTACCCGCCTTAGAGACAATCAATTCGAAGTTCCATCGCATGAAAAGTATCATGGAAGAAGACTCATCAAGTGATAATTCATCCCTCATCAGCAATAATTCAGACGATTGTTCTTGCAGCACTGATAGCACTTATGATTCAACAAGTACCGACGAATTTGCAGATTATATTTTTGGTAATTCAGGACGAGTTGGGGGCGGCACTTCCACCGCATGTTCAAGAGTGGGGATCGACGGTCTTTTGTATTGGAGTAGACCCGTGGATGTTGAAAGGAGTGATAAATGTGTTTCTCATTTGCATCACAACACAAGTATAGAGCATAGTAAGTTAGATACATGTAGGAGTAGTTTTAGGCAGAGTAATTCTTTTGAGAGAGCAGGATCCAATGATTTTAGCTATATAAATTCTGGTGTAACACATAGAAAGACAAGAGAAACAAAGGATTGA 3117 0.4052 MRVTVDLGFSSLLFAALICVILPAIGFFIRYKWRRAAERAEEIKRLLILTAEESARAEREAAASYQYVVAANSYQYQNGAVSASSQYVSPNSHQNGAASVDKSNQCVVCFSPTTTRCARCKAVHYCSGKCQIAHWRQGHKDKCHPPSTARQTDDLVSNISKKLAKPDRRGFNDEKSRIESTEITKSSEKPPLSDIKRSPKFSCVGTDNARVESPAEENIADSNSELSCNSFSGFSASTGANGSSSSDDSSVCESIISNEHERSEGPISTDHTFDVSDNTSNGHSIGATIPLSPKFASLVDSARPGIGKEEIKLTSNDSSGLMMQKGGTEPSKVSYGFWNGTLDSNGVKDDSFGDPLLSHSNEPVTKSVGKNMPNIGLGSSKNEGLDSTRYTDASSIHNLHTVGSKVSNHVVINPGSSLRSAEISCLPCTSAETKLVSRAVEEEHLHYSSKFMNNGTHSGTGNSSQVANCSPTSKDGLKTSVMKVVDQFRGSNMSKHFPIAVGSDVAVKYSEKGLFPYDLFIKLYNSNRVEVQPFGLTNCGNSCYANAVLQCLVFTPPLTAYLLQGLHSKSCVNKKWCFICEFESLILKSKDTKSPLSPIGILSQLQNIGSQLGNGREEDAHEFLRHVIETMQSVCLMECEANASDSLKEQTNLVGLTFGGYLRSKIKCMTCGGKSERQERMMDLTVEIEGEIASLEDALKQFTSIETLDGENKYHCVRCKSYEKAKKKMAVSEAPNVLTIALKRFRSGKYGKLNKPIQFPEILDLAPFMSGTSDLAIYRLYGVVVHLDTMNASYSGHYVCYVKNFQNSWFKIDDSVVTPVELETVLTKGAYMLLYARCSPRAPRLIRNMIVSSDSKTKLNGKTIIMKYKHASTHSGSTEYMTNSVSGTYDLPALETINSKFHRMKSIMEEDSSSDNSSLISNNSDDCSCSTDSTYDSTSTDEFADYIFGNSGRVGGGTSTACSRVGIDGLLYWSRPVDVERSDKCVSHLHHNTSIEHSKLDTCRSSFRQSNSFERAGSNDFSYINSGVTHRKTRETKD* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2507 1038 Pfam MYND finger 106 143 IPR002893 -
Tpr4g2507 1038 MobiDBLite consensus disorder prediction 164 222 - -
Tpr4g2507 1038 MobiDBLite consensus disorder prediction 164 195 - -
Tpr4g2507 1038 Pfam Ubiquitin carboxyl-terminal hydrolase 534 835 IPR001394 GO:0004843|GO:0016579
Tpr4g2507 1038 ProSiteProfiles Zinc finger MYND-type profile. 106 143 IPR002893 -
Tpr4g2507 1038 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 535 550 IPR018200 GO:0004843|GO:0006511
Tpr4g2507 1038 MobiDBLite consensus disorder prediction 359 383 - -
Tpr4g2507 1038 MobiDBLite consensus disorder prediction 452 472 - -
Tpr4g2507 1038 Gene3D Cysteine proteinases 527 847 - -
Tpr4g2507 1038 Gene3D - 92 148 - -
Tpr4g2507 1038 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 534 838 IPR028889 -
Tpr4g2507 1038 SUPERFAMILY HIT/MYND zinc finger-like 103 145 - -
Tpr4g2507 1038 SUPERFAMILY Cysteine proteinases 530 841 IPR038765 -
Tpr4g2507 1038 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 967 1020 - -
Tpr4g2507 1038 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 958 - -
Tpr4g2507 1038 ProSitePatterns Zinc finger MYND-type signature. 106 143 IPR002893 -
Tpr4g2507 1038 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 19 958 - -
Tpr4g2507 1038 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 967 1020 - -
Tpr4g2507 1038 MobiDBLite consensus disorder prediction 259 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2507 Tpr-Chr4 27118846 27126465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2507 466 842 Miscellaneous Gene Families AT4G31670 46.134 1.50e-117 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2507 K11855 - gmx:100782303 1200.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2507 4 27118846 27126465 Tpr4g2507 4 27118846 27126465 ECH