Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2469 ATGAGTGCAAGATTAACCGACGTAGTTCTCGACTGTGTGATGCCGTACATCCACGACGCAAAAGACAGAGACGCAGTTTCACAGGTCTGTAAACGATGGTACGAGATCGATTCATCAACTCGAAAGCACGTGACGATTGCTTTGTGTTACACAACGACGCCGGATAGACTCCGGCGACGGTTTCCTCATCTTGAATCGTTGAAACTGAAAGGAAAACCTAGAGCGGCGATGTTTAATTTGATACCGGAAAATTGGGGAGGTTTTGTTACTCCTTGGGTTAGAGAAATTGAGAAGTATTTTGATTGTTTGAAATCGTTACACTTTCGGAGAATGATTGTTACTGATGATGATCTTTCGATTCTTGCTCGGTCTCGTCATCAGAGTCTTCATGCTCTTAAGCTTGAAAAGTGTTCTGGATTTTCTACTGATGGACTTTACACTATTTGTCACACTTGCAAGAATTTAAGAGTCTTGTTTATGGAGGAAAGCTCAGTTATTGAGAATAATGGTGAATGGCTGCATGAGCTTGCTTTGAATAACACCGTTCTTGAGACACTGAATTTTTACTTGACTGATATTAACAATATCAGAATTCAGGACCTTGAACTTATAGCGAAAAACTGCCCCAACTTGGTCTCTGTTAAAATTACTGATTGTGAAATCTTGAATCTGGTGAACTTCTTTCGATATGCATCTTCTCTTGAAGAATTTTGTGGAGGTTCCTACAATGAAGATCCAGAAAAGTACACTGCTGTATCATTACCAGCAAAGTTAAATCGATTGGGTTTGACATATATTGGAAAGAATGAAATGCCAATTGCGTTCCCTTATGCAGCCCAATTGAAAAAGTTGGACCTTCTCTATGCAATGCTGGATACGGAGGATCATTGTACATTAATCGAGAAATGCCCCAACTTGGAAATCCTTGAGTCAAGGAATGTAATTGGAGACAGAGGATTAGAAGTACTTGCTCGCTGTTGTAAGAAGCTGAGAAGGCTAAGAATCGAAAGAGGTGATGATGATCCAGGAATGGAAGATGAAGAAGGTGTTGTTTCCCAAAGAGGACTAATTGCCTTATCACAGGGCTGTCCAGAACTTGAATACATGGCTGTTTATGTATCCGACATCACAAATGCATCTCTAGAACACATTGGTACTCACTTGAAAAACCTCTGCGATTTTCGCCTTGTCTTGCTAGACCGAGAGGAGAGGATAACCGATTTGCCACTTGACAACGGTGTGAGGGCTTTACTGAGAGGTTGCGAAAAGCTTAGAAGATTTGCTCTATATCTCAGACCTGGAGGCTTAACTGATGTAGGCTTAGGCTACATAGGACAATACAGTCCAAACGTGAGATGGATACTTCTCGGTTATGTCGGCGAAACTGATGCAGGGCTCTTGGAATTCTCCAAAGGTTGTCCAAGTCTACAAAAACTTGAAATGCGAGGATGTTCATTTTTCAGTGAATATGCATTAGCTGTTGCTGCAACTAGATTAAAATCTTTGAGGTATCTTTGGGTACAAGGATATGGAGCATCATCTTCTGGGCGCGATCTTTTGGCAATGGCGCGACCCTATTGGAATATTGAGGTGATTCCTTCGAGACGTGTGGTTGTTAACAATCAACAAGATGAGTCTGTTGTCATGGAGATGGAGCATCCAGCTCATATTCTTGCTTATTACTCCCTTGCTGGACCAAGATCAGATTTTCCTGATACTGTTATACCTTTGGATCCTGCTGCTGCACCATCATATGTTAACACCTAA 1767 0.4148 MSARLTDVVLDCVMPYIHDAKDRDAVSQVCKRWYEIDSSTRKHVTIALCYTTTPDRLRRRFPHLESLKLKGKPRAAMFNLIPENWGGFVTPWVREIEKYFDCLKSLHFRRMIVTDDDLSILARSRHQSLHALKLEKCSGFSTDGLYTICHTCKNLRVLFMEESSVIENNGEWLHELALNNTVLETLNFYLTDINNIRIQDLELIAKNCPNLVSVKITDCEILNLVNFFRYASSLEEFCGGSYNEDPEKYTAVSLPAKLNRLGLTYIGKNEMPIAFPYAAQLKKLDLLYAMLDTEDHCTLIEKCPNLEILESRNVIGDRGLEVLARCCKKLRRLRIERGDDDPGMEDEEGVVSQRGLIALSQGCPELEYMAVYVSDITNASLEHIGTHLKNLCDFRLVLLDREERITDLPLDNGVRALLRGCEKLRRFALYLRPGGLTDVGLGYIGQYSPNVRWILLGYVGETDAGLLEFSKGCPSLQKLEMRGCSFFSEYALAVAATRLKSLRYLWVQGYGASSSGRDLLAMARPYWNIEVIPSRRVVVNNQQDESVVMEMEHPAHILAYYSLAGPRSDFPDTVIPLDPAAAPSYVNT* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2469 588 SUPERFAMILY RNI-like 80 336 - -
Tpr4g2469 588 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 4 580 - -
Tpr4g2469 588 Pfam Transport inhibitor response 1 protein domain 62 108 IPR041101 -
Tpr4g2469 588 SMART LRR_CC_2 126 151 IPR006553 -
Tpr4g2469 588 SMART LRR_CC_2 421 447 IPR006553 -
Tpr4g2469 588 SMART LRR_CC_2 473 498 IPR006553 -
Tpr4g2469 588 SMART LRR_CC_2 303 326 IPR006553 -
Tpr4g2469 588 SMART LRR_CC_2 363 387 IPR006553 -
Tpr4g2469 588 Gene3D Ribonuclease Inhibitor 42 581 IPR032675 -
Tpr4g2469 588 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 4 580 - -
Tpr4g2469 588 Pfam F-box 4 43 IPR041567 -
Tpr4g2469 588 Gene3D - 1 41 - -
Tpr4g2469 588 SUPERFAMILY RNI-like 269 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2469 Tpr-Chr4 26436461 26441378 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2469 K13463 - gmx:100793081 1036.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0903 7 8120898 8124758 Tpr4g2469 4 26436461 26441378 PCT