Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2378 ATGCAAAAAATGATCAACAATAGCAGCCCACAAGATTGGCCTGAGCCAATAATCAGAGTTCAATCTTTATCCCAAACTTGCATAGATTCAATCCCTCAAAGGTATATCAAACCCCTTAGTGACCGTCCATCAAAAAACACTTCTTTTGAAACAACCAATTTCAACATCCCAATAATTGACCTTAAAGGTTTATATAGTATTGACCCAAATGAAAAAGCTTCAACTTTTAAGCAAATTTCTGAGGCATGTAATGAATGGGGATTCTTTCAAATTGTTAATCATGGTGTTAGTCATGATTTGATGGATTTAGCTAAGGAAACTTGGCGTGAATTTTTTCATTTGCCTATGGAAGTGAAACAACAATATTCAAATTCACCAAAAACTTATGAAGGGTATGGTAGTAGACTTGGTGTTAAGAAAGGTGCTATTCTTGATTGGAGTGATTACTATTATCTTCATTATCTTCCTTTGTCTTTGAAGGATTACAACAAATGGCCTGCTCAGCCTCCTTCTTGCAGGGAAGTATTTGATGAATATGGAAAAGAGTTAGTGAAATTATGTGGGAGATTAATGAAGGTTCTATCTATAAACCTTGGATTAAAAGAAGATTATCTTCAAAATGCATTTGGAGGTGAAGAAATTGGTGCTTGCATAAGAGTGAATTATTACCCAAAATGTCCTCAACCAGATTTAACTCTTGGTTTATCATCACACTCAGATCCAGGTGGCATGACACTTTTGCTACCAGATGATGAAGTACATGGTCTTCAAGTTCGTAAAGGAGATAATTGGATTACAGTCAAACCTGTTAAGAATGCATTTATTGTCAATATTGGTGATCAAATTCAGGTTCTAAGCAATGCAATGTACAGGAGTGTAGAGCATAGAGTACTAGTAAACTCGCATAAAGAGAGGGTTTCTTTAGCTTTCTTCTACAACCCTAAAAGTGACATACCAATTGAGCCAGCAAAAGAATTGATAAAACCGGAAAGGCCTGCACTTTACCCTCCTATGACCTTCGACGAGTACAGACTCTTCATTCGAATGAGGGGACCATGTGGAAAATCTCAAGTCGAATCTTTAAAATCTCCAAGATGA 1098 0.3634 MQKMINNSSPQDWPEPIIRVQSLSQTCIDSIPQRYIKPLSDRPSKNTSFETTNFNIPIIDLKGLYSIDPNEKASTFKQISEACNEWGFFQIVNHGVSHDLMDLAKETWREFFHLPMEVKQQYSNSPKTYEGYGSRLGVKKGAILDWSDYYYLHYLPLSLKDYNKWPAQPPSCREVFDEYGKELVKLCGRLMKVLSINLGLKEDYLQNAFGGEEIGACIRVNYYPKCPQPDLTLGLSSHSDPGGMTLLLPDDEVHGLQVRKGDNWITVKPVKNAFIVNIGDQIQVLSNAMYRSVEHRVLVNSHKERVSLAFFYNPKSDIPIEPAKELIKPERPALYPPMTFDEYRLFIRMRGPCGKSQVESLKSPR* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2378 365 Pfam non-haem dioxygenase in morphine synthesis N-terminal 56 167 IPR026992 -
Tpr4g2378 365 Gene3D - 16 348 IPR027443 -
Tpr4g2378 365 PANTHER LEUCOANTHOCYANIDIN DIOXYGENASE-LIKE PROTEIN 14 362 - -
Tpr4g2378 365 SUPERFAMILY Clavaminate synthase-like 17 347 - -
Tpr4g2378 365 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 14 362 - -
Tpr4g2378 365 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 213 314 IPR005123 -
Tpr4g2378 365 Pfam 2OG-Fe(II) oxygenase superfamily 216 314 IPR044861 -
Tpr4g2378 365 PRINTS Isopenicillin N synthase signature 79 96 - -
Tpr4g2378 365 PRINTS Isopenicillin N synthase signature 274 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2378 Tpr-Chr4 25273174 25276665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2378 20 362 Glycosyltransferase AT5G59530 32.286 2.69e-49 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2378 - - gmx:100794125 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0958 7 8850991 8855882 Tpr4g2378 4 25273174 25276665 ECH
Tpr4g2378 4 25273174 25276665 Tpr4g2378 4 25273174 25276665 ECH