Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2324 ATGGGAGATCAATTAGCAAAAGCAGAAGATTGTGAGAACAAGGCAGAGAAAAAGCTAAGTAGTTGGGGCATGTTTGGTTCCAAATTTGAAGATGCTGCTGATCTATTTGATAAATCTGCAAATCATTATAAACTCGCCAAATCATGGGATAAAGCAGGATCAACCTATGTTAAGTTAGCAAATTGTCATTTGAAGTTGGAAAGCAAACATGAAGCTGCCTCAGCTTATGTTGATGCTGCACATTGCTACAAAAAAATCAATATGAATGAGGCTATATCTTGCTTAGATAATGCTGTAAATAATTTCTGTGACATTGGAAGAATTTCTATGGCTGCTAGATATTTGAAGGAAATTGCAGAATTATGCGAGTCTGAACAAAATATTGAGAAGGCCCTTGTTTATTATGAAAAATCAGCTGATTTGTACGAAAGCGAAGAAGTGACAACATCTGCAAACCAATGCAAGCAAAAAGTTGCTCAATTTTCTGCTCAGCTACAACAATATCAGAAAGCGATCGAAATTTACGAAGACATAGCTCGTCAATCTCTCAGCAATAATTTGTTGAAGTACGGAGTTAAAGGACATCTTCTTAATGCTGGGATTTGCCAACTTTGTAAAGGAGATGTTATTGCGATTACCAATGCATTAGAGCGATATCAGGACTTGGATCCAACATTTTCAGGAACACGCGAATATAGACTTTTGGCGGATGTCGCGGCTGCAATTGATGAAGAAGATGTTGCAAAGTTTACTGAAGTTGTCAAGGAGTTTGATAGCATGACTCCTTTGGATTCTTGGAAAACAACACTTTTTCTTAGGGTGAAGGAACAAATAAAAGCAAAAGAACTTGAGGAGGATGATCTTACATAA 870 0.3701 MGDQLAKAEDCENKAEKKLSSWGMFGSKFEDAADLFDKSANHYKLAKSWDKAGSTYVKLANCHLKLESKHEAASAYVDAAHCYKKINMNEAISCLDNAVNNFCDIGRISMAARYLKEIAELCESEQNIEKALVYYEKSADLYESEEVTTSANQCKQKVAQFSAQLQQYQKAIEIYEDIARQSLSNNLLKYGVKGHLLNAGICQLCKGDVIAITNALERYQDLDPTFSGTREYRLLADVAAAIDEEDVAKFTEVVKEFDSMTPLDSWKTTLFLRVKEQIKAKELEEDDLT* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2324 289 CDD SNAP 7 278 IPR000744 GO:0006886
Tpr4g2324 289 Coils Coil 151 178 - -
Tpr4g2324 289 Gene3D Tetratricopeptide repeat domain 5 288 IPR011990 GO:0005515
Tpr4g2324 289 PANTHER ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 1 289 - -
Tpr4g2324 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Tpr4g2324 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Tpr4g2324 289 PRINTS NSF attachment protein signature 119 136 IPR000744 GO:0006886
Tpr4g2324 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Tpr4g2324 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Tpr4g2324 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Tpr4g2324 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Tpr4g2324 289 SUPERFAMILY TPR-like 7 281 IPR011990 GO:0005515
Tpr4g2324 289 Pfam Soluble NSF attachment protein, SNAP 7 279 - -
Tpr4g2324 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 1 289 IPR000744 GO:0006886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2324 Tpr-Chr4 24613636 24617230 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2324 K15296 - gmx:100794564 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g1021 7 9692587 9698266 Tpr4g2324 4 24613636 24617230 ECH
Tpr4g2324 4 24613636 24617230 Tpr4g2324 4 24613636 24617230 ECH
Tpr7g1021 7 9692587 9698266 Tpr4g2324 4 24613636 24617230 PCT