Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1949 ATGACCATCGACTTAGATTCGAAAACTCGCAGAGTCGATGTTGATAATCGCATTCCTCTCCGTCATTACTATCGAATTGCCGATAATCTCCTCAAGCAGGCAAGTGTCTACAGGGAGGAGAATAATATAGTTGACCTGTACATCATACTCCTTAGATTTATAAGTTTGGTTTCTGAGACAATACCATATCACCGAGATTACCAAGCTTCACTTCCCAATGAAAGAACAGCATATAAGAGGAGATCACTACTAGTATTGGATGAGCTTGAGTCCTTGAAGCCTGAATTTAAACGTCGGTTGGACAAATTGAATGAATCACGTGTACAAGCTCCATTGCCTGAAGAAAATGGTTTCAATATGGTTATGCAGAGTCCAGCAAATTCAAGTTTGGAATGGCCAGCTGTCAATAAAAGATATAACTCAAGCATGGATTTCAAACATTCTGCTGGATTGGGCTCACAATCTTCATCGAAACCTAATAACATGTTATCTACAATTTCCACGCCTATTGATAAGCAGTTTCAGAAATTATCTATGAATCTGCCACTACCAAATAAGGAGACCTTGTCAAGACACTCATTTTTAGGACCAAATGGTCTTCGGGGACAATGGCTTGGACCTAGTGCAGAAATTAAGGTTCAATATCCAAGCAGTAATGATCTTACGCATGCCAAGGATTCAAGCGTTGTAAAGTATGACCTTGTTGGCATTAAAGATGGTGACCAAGGGCCAGTTACATCCACAATGGATTCAATTCTTTCCTTGGATGATGGTAGATGGTCGCATCCTATGGATGAGTCCTGTTCTCCTGTTGTAACTGAATCAAGGGAGGACTACTTACAGTTGCTCAACATCAAGCAACCTTTGCCTCCTCCTGTTCTTGCTCAGGTTCACCCAGAACGTGCCTCTATTCCTCCTTCAAAAGTTGCAGATCCAAGGCCAGGACCGGCGAAATCTTCTCATGATTCTGGACATGGTCCCACTACATATCAACACCTACACATTCCTGTAAAAATGATGGAAGATTTTCTGAGATTGGCTTCAGCAAACACGCGAAAGAACTTAGAGACGTGTGGTGTTCTTGCAGGGTCTCTGAAAAACAGGGTTTTTCAGATCACAACACTTATAATCCCAAAGCAGGAATCGACTTCTGACTCGTGTGAAACGTTGGATGAAGGAGAAATATTTGACGTTCAAGACCGCTTGTCACTTTTTCCTCTAGGTTGGATACATACACACCCGTCTCAGACGTGTTTCATGTCATCTGTGGATCTGCATACGCATTACTCATATCAGATCATGTTACCGGAGGCAATTGCAATAGTCATGGCTCCTACCGATACAGAAAGTCCACATGGCATATTTCATCTGTCTGATCCAGGTGGTGTTTCTGTAATTCGTAATTGTCAACAACGTGGATTTCATCCCCATGAAGAGCCTTCAGATGGAAGTCCAATATATGAGCACTGCTCTCATGTCTATATGAATGCCAACATGAAGTTCGATGTGATTGACCTTCGACAGAAATGA 1530 0.4196 MTIDLDSKTRRVDVDNRIPLRHYYRIADNLLKQASVYREENNIVDLYIILLRFISLVSETIPYHRDYQASLPNERTAYKRRSLLVLDELESLKPEFKRRLDKLNESRVQAPLPEENGFNMVMQSPANSSLEWPAVNKRYNSSMDFKHSAGLGSQSSSKPNNMLSTISTPIDKQFQKLSMNLPLPNKETLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSNDLTHAKDSSVVKYDLVGIKDGDQGPVTSTMDSILSLDDGRWSHPMDESCSPVVTESREDYLQLLNIKQPLPPPVLAQVHPERASIPPSKVADPRPGPAKSSHDSGHGPTTYQHLHIPVKMMEDFLRLASANTRKNLETCGVLAGSLKNRVFQITTLIIPKQESTSDSCETLDEGEIFDVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTESPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPSDGSPIYEHCSHVYMNANMKFDVIDLRQK* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1949 509 ProSiteProfiles MPN domain profile. 333 463 IPR037518 -
Tpr4g1949 509 Gene3D - 2 116 - -
Tpr4g1949 509 Pfam USP8 dimerisation domain 4 99 IPR015063 -
Tpr4g1949 509 MobiDBLite consensus disorder prediction 303 327 - -
Tpr4g1949 509 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 329 436 IPR000555 GO:0005515|GO:0008233|GO:0008237
Tpr4g1949 509 SUPERFAMILY JAB1/MPN domain 332 463 - -
Tpr4g1949 509 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 3 3 507 - -
Tpr4g1949 509 PANTHER AMSH-LIKE PROTEASE 3 507 - -
Tpr4g1949 509 Coils Coil 86 106 - -
Tpr4g1949 509 SMART pad1_6 332 460 IPR000555 GO:0005515|GO:0008233|GO:0008237
Tpr4g1949 509 SUPERFAMILY USP8 N-terminal domain-like 12 108 - -
Tpr4g1949 509 Gene3D Cytidine Deaminase, domain 2 317 509 - -
Tpr4g1949 509 CDD MPN_AMSH_like 330 507 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1949 Tpr-Chr4 20280806 20289816 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1949 K11866 - gmx:100812784 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1949 4 20280806 20289816 Tpr4g1949 4 20280806 20289816 ECH