Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1940 ATGCAATCCTCTCTCTCACTCTCCTTGTCTCCCGCATCATCTGCCACCACAATCTCCAGATCACATCACTCTTTTCCACTCTCCACCGGCACCAATCCTCTCAACCTCCGTTTCTGCGGTTTCAGACGCCAGTCCTTGGGTTTAGGTTTTTCAACCTCTCTCAACCGTAATCTCCACCAGCTTCTCCGTCGTCAATACTCCGCCGTAGTATCCGCTGCGCGCTCTGACAATGGCAGCACTTATGGATCATCCTTCGATTACGATTCGTTGATAACTGGTGCTGGTGTTGGTGGTCACGGTGTGGCTCTTCATGCTGTTGAAAAGGTTTCTTCTGCTGGGTATGATAAACAAGGAATAGCTGATTATGCTAATAATCTTGCTTCAAAATTCCGTAGTAATTTGACAAACTCCCTAGTGACAGGAGTAGACATACTTACTGGTTTTGGTATTGATGATACAAATGACACAAATGAAGACAAAACAAATGTTACTAATCTAGAAAGATCTAACGAACTCACTGCGAATAAAGATTATAGCCATTTGTGGGTTCAGTGCGAAGATTGTTATGGATTAAATTATAAGAGATTTTTGAAAGAAAAAATGAATATCTGCGAACACTGTGGATATCATTTGAAAATGAACAGTTCAGATAGAATCGAACTTTTGATTGATCCAGGTACTTGGAATCCTATTGATGAATATATGGTCTCTCTGGATCCCATCGAATTTCATTCAGAAGAGGACCCTTATCGTCTTGATCCTTATCAACAAAAAACAGGATTACTAGAGGCAGTTCAAACAGGCACAGGTCAACTACATGGTATTCCTGTAGCAATTGGTATTATGGAGTTTGAGTTTATGGGGGGTAGTATGGGATCCGTAGTGGGTGAGAAAATTACTCGGTTGATTGAATATGCTACCAATCAACGCTTACCTCTTATTATAGTATGTGCGTCCGGAGGAGCGCGTATGCAAGAAGGAAGTTTGAGCTTAATGCAAATGGCTAAAATTTCTTCTGCTTTACATGAGTATCAAACCAATCAAAAGTTATTCTATGTACCGATACTTACATCTCCTACAACTGGTGGAGTAACAGCTAGTTTTGGGATGTTGGGGGATATCTGTATTGTCGAACCAGACGCAACCATTGCATTTGCAGGTAAAAGAGTAATTGAACAAACGTTGAATCTGGAAGTGCCTGAAGGTTCACAATCGGCTGAATTTTTATTCGAAAAGGGTTTATTTGATTCAATGGTGCCGCGTAATCTTTTAAAGGAGGTTTTAAGTGAGTTATTTCAGTTCCATGGTTTCTTTCCTTTGACTCCAAATGAAAAAGGAGAAGATACATATGAAGCTGAAAATGTGGTTTAG 1371 0.4041 MQSSLSLSLSPASSATTISRSHHSFPLSTGTNPLNLRFCGFRRQSLGLGFSTSLNRNLHQLLRRQYSAVVSAARSDNGSTYGSSFDYDSLITGAGVGGHGVALHAVEKVSSAGYDKQGIADYANNLASKFRSNLTNSLVTGVDILTGFGIDDTNDTNEDKTNVTNLERSNELTANKDYSHLWVQCEDCYGLNYKRFLKEKMNICEHCGYHLKMNSSDRIELLIDPGTWNPIDEYMVSLDPIEFHSEEDPYRLDPYQQKTGLLEAVQTGTGQLHGIPVAIGIMEFEFMGGSMGSVVGEKITRLIEYATNQRLPLIIVCASGGARMQEGSLSLMQMAKISSALHEYQTNQKLFYVPILTSPTTGGVTASFGMLGDICIVEPDATIAFAGKRVIEQTLNLEVPEGSQSAEFLFEKGLFDSMVPRNLLKEVLSELFQFHGFFPLTPNEKGEDTYEAENVV* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1940 456 PANTHER - 163 440 - -
Tpr4g1940 456 PANTHER ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE SUBUNIT BETA, CHLOROPLASTIC 163 440 - -
Tpr4g1940 456 Hamap Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 170 437 IPR000438 GO:0003989|GO:0006633|GO:0009317
Tpr4g1940 456 Pfam Carboxyl transferase domain 217 398 IPR034733 -
Tpr4g1940 456 TIGRFAM accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 174 435 IPR000438 GO:0003989|GO:0006633|GO:0009317
Tpr4g1940 456 PRINTS Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 284 298 IPR000438 GO:0003989|GO:0006633|GO:0009317
Tpr4g1940 456 PRINTS Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 318 336 IPR000438 GO:0003989|GO:0006633|GO:0009317
Tpr4g1940 456 PRINTS Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 356 373 IPR000438 GO:0003989|GO:0006633|GO:0009317
Tpr4g1940 456 PRINTS Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 385 396 IPR000438 GO:0003989|GO:0006633|GO:0009317
Tpr4g1940 456 PRINTS Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 407 416 IPR000438 GO:0003989|GO:0006633|GO:0009317
Tpr4g1940 456 ProSiteProfiles Acetyl-coenzyme A (CoA) carboxyltransferase N-terminal domain profile. 181 450 IPR011762 -
Tpr4g1940 456 SUPERFAMILY ClpP/crotonase 181 432 IPR029045 -
Tpr4g1940 456 Gene3D - 181 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1940 Tpr-Chr4 20217677 20219757 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1940 162 443 Acyl Lipid Metabolism Gene Families ATCG00500 72.183 8.67e-148 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1940 K01963 - cpap:5878364 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1940 4 20217677 20219757 Tpr4g1940 4 20217677 20219757 ECH
Tpr4g1940 4 20217677 20219757 Tpr5g2814 5 51161030 51167708 PCT