Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1931 ATGGCGAACAAGTACAACATGAAGAATCCCGCCGTTAAGCGGATTCTCCAAGAGGTCAAAGAGATGCAATCCAATCCTTCCGATGATTTCATGAGCCTTCCTCTCGAGGAGAATATATTTGAATGGCAATTTGCGATTAGGGGAGCTCGTGAAACTGAATTTGAAGGTGGCATTTATCATGGAAGGATACAGTTACCAGCTGAATATCCATTCAAACCTCCTTCATTTATGTTGTTAACACCTAATGGTCGTTTTGAGACTCAAACTAAGATTTGTTTGAGCATATCAAATCATCACCCTGAGCACTGGCAACCATCGTGGAGCGTACGGACTGCTCTAGTTGCCCTTATTGCATTCATGCCCACCAACCCAAATGGTGCATTGGGTTCATTAGACTACAAGCAAGAAGATAGGCGAGCCTTGGCCATTAAATCCCGTGAAGCATCTCCAAAATTTGGGACTCCTGAACGTCAAAAACTGATTGATGAGATACATGAGTATATGCTAAGCAAGCCAATCCCAGTTGAGGGACCAAGCCCTTCACAGGCTTCTGAAGAACCCAAAAAGGAGGAGGCTGAGACCCAAGTTACTTTGGAAAATACTGAGGCTCTACCTGCAGGAGAAGGGATTCCAGATCAAGCAGGTGACAGAATTGTTGAAGAACAAGTCCCTGCCAATGTTAATCCTAACCCAGCAGGAGTTGAAGCATCAAATGAGATTCCATCTGGCGTCTCAACCAATCAGTTGCCCCGAACGTCAGATACAAGGGTTCAAAATCTGAAACCAGGGATAAGGGTTCAAAAACCTGATGACCGATTGTTCACTCTGGCAGCTATTGGACTTGCTATTGCAATTATGGTTCTTTTGCTGAAGAAATTCATTAAATCTACAGAACATGGAGCAGTTTTCATGGATGGATCTTAG 924 0.4383 MANKYNMKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGARETEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKQEDRRALAIKSREASPKFGTPERQKLIDEIHEYMLSKPIPVEGPSPSQASEEPKKEEAETQVTLENTEALPAGEGIPDQAGDRIVEEQVPANVNPNPAGVEASNEIPSGVSTNQLPRTSDTRVQNLKPGIRVQKPDDRLFTLAAIGLAIAIMVLLLKKFIKSTEHGAVFMDGS* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1931 307 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 165 IPR000608 -
Tpr4g1931 307 PANTHER BNAC01G21910D PROTEIN 6 307 - -
Tpr4g1931 307 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 307 - -
Tpr4g1931 307 SUPERFAMILY UBC-like 11 132 IPR016135 -
Tpr4g1931 307 CDD UBCc 12 151 IPR000608 -
Tpr4g1931 307 Gene3D Ubiquitin Conjugating Enzyme 1 172 IPR016135 -
Tpr4g1931 307 MobiDBLite consensus disorder prediction 173 195 - -
Tpr4g1931 307 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Tpr4g1931 307 SMART ubc_7 13 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1931 Tpr-Chr4 20162538 20165023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1931 4 305 Miscellaneous Gene Families AT3G17000 63.548 1.00e-131 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1931 K10578 - gmx:100804054 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1931 4 20162538 20165023 Tpr4g1931 4 20162538 20165023 ECH