Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1927 ATGAACTCAATCCCTTCTCCTCCATCTGCTACACTCTTCACTCAGTCCAAAAATCCTAACCATCTCTTCAAATTCAACCTCAAAGTTCCCATCTTACCCTTCCATTCTTCACCTTCCAATCTCACCACACCATGTTGCACTCTCAAAGACTCAACTTCAGTTTTGGACAAAAATGCCCCTTCCTCCGAACAGAGTACCCTCAATTACATTCCACCTGAAGACTCAAACTTAGTTGAAGGAACACTCGTGGTTCGCCGACCGGTGAAGGAATTTTCCGGCCAAAACTTTGATGAGAAGGAAGAACAAGATAATTATGAAACAGAGGAAGAGGAACCAAAAGCTTCTTCAATTGATGCCGAGCTAACGAAATTTGCGAAGAAGATGCCGATGTTTGAACCAGGGAGGGTTGAATCAGACTCGGAAAAGAAGCCTTTGACTGTGAATTTGGACTTGACATTATATAAGGCCAAGGTTTTGACAAGAAACTTTCGTTATGAAGAAGCAGAGGAAATACTTCAGCAGTGCATATACTATTGGCCTGAAGATGGCAGACCTTATGTGGCACTTGGGAAAGTTTTGAGTAAGCAATCTAAAACAAGTCAAGCTAGAGAGGTTTATGAGAAGGGTTGCCAAGCTACTCAGGGTGAAAATGCCTTCATTTGGCAGTGCTGGGCTGTTCTTGAAAATAGAATGGGGAATGTCCGGAGAGCAAGAGAGCTTTTCGATGCTGCAACGGTTGCTGATAAGAAGCATGTTGCTGCTTGGCATGGTTGGGCAGTTCTAGAGTTAAAGCAGGGAAATATAAAGAAGGCAAGGAGTCTGCTTTCAAAAGGTCTTCAATATTGTGGACAAAATGAGTACATATATCAAACACTTGCATTGCTTGAAGCTAAGGCAAATAGATATCAGCAGGCTCGATATTTATTCAATCAGGCCACAAAGTGTAATCCAAAAAGTTGTGCTAGTTGGCTTGCTTGGGCTCAAATGGAGGTGGAACAGGAAAATAATCGTACCGCGAGGAAACTGTTTGAGAATGCAGTGCAGGCAAGTCCTAAAAATAGGTTTGCTTGGCATGTATGGGGCGTCTTTGAAGCAAACTTAGGAAAGATTGACAAGGGAAAAAAACTACTGACGATTGGCCATGCTCTAAATCCGAGGGATGCTGTTCTCCTGCAGTCTCTTGCATTAATAGAATACAGACACGCAAGTGCAAACCGTGCTCGTGTTTTGTTCAGGAGAGCATCTGAATTGGATCCGAAGCATCAACCTGTTTGGTTTGCTTGGGGTTGGATGGAATGGAAAGAAGGAAACTTGAATACAGCTAGAGAGTTATACAAAAAAGCTATATCAATTGATCAAAACAGTGAAAGTGCTGCAAGGTGTCTCCAGGCATGGGGTGTTCTGGAGCAGAGGGTTGGAAATCTTTCAGCTGCTCGTGGATTATTTAGATCCTCATTGAATATAAATTCTCAGAGTTATGTGACATGGATGACTTGGGCATCACTAGAGGAAGATCAAGGAAATCCTGTGCGTGCTGAGGAGATTCGTAACCTTTATTTCCAGCAGCGCACGGAAGTGGTAGATGATGCTTCATGGGTCATGGGATTCTTAGATATTTTAGACCCTGCCATTGACAGCTTGAAGAAACTCTTGAAGATGGACCAAAATTCGTTAAACATGCCACCAGATTCCATGAGAAATATTACCAGACTGAAAAAAGACACGGTTGATTATTCTAGTGACAGCGATGGTAATGATGATATGGATGATGAAAGCGAGTTTGATTTGGACCGTTTCATTATGGAAAGGTTATCCTTAGATGTATCAAACTTGGAAGTTCAACTGGAAACACCGAAAATTTCCTCTCCGAACAAAATTTTGTCTCCAAGAAAGATATGGCGACCAGATAATAGAATTTCCAACAAAGTGTAA 1932 0.4203 MNSIPSPPSATLFTQSKNPNHLFKFNLKVPILPFHSSPSNLTTPCCTLKDSTSVLDKNAPSSEQSTLNYIPPEDSNLVEGTLVVRRPVKEFSGQNFDEKEEQDNYETEEEEPKASSIDAELTKFAKKMPMFEPGRVESDSEKKPLTVNLDLTLYKAKVLTRNFRYEEAEEILQQCIYYWPEDGRPYVALGKVLSKQSKTSQAREVYEKGCQATQGENAFIWQCWAVLENRMGNVRRARELFDAATVADKKHVAAWHGWAVLELKQGNIKKARSLLSKGLQYCGQNEYIYQTLALLEAKANRYQQARYLFNQATKCNPKSCASWLAWAQMEVEQENNRTARKLFENAVQASPKNRFAWHVWGVFEANLGKIDKGKKLLTIGHALNPRDAVLLQSLALIEYRHASANRARVLFRRASELDPKHQPVWFAWGWMEWKEGNLNTARELYKKAISIDQNSESAARCLQAWGVLEQRVGNLSAARGLFRSSLNINSQSYVTWMTWASLEEDQGNPVRAEEIRNLYFQQRTEVVDDASWVMGFLDILDPAIDSLKKLLKMDQNSLNMPPDSMRNITRLKKDTVDYSSDSDGNDDMDDESEFDLDRFIMERLSLDVSNLEVQLETPKISSPNKILSPRKIWRPDNRISNKV* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1927 643 Pfam Tetratricopeptide repeat 230 276 - -
Tpr4g1927 643 ProSiteProfiles TPR repeat profile. 286 319 IPR019734 GO:0005515
Tpr4g1927 643 SUPERFAMILY TPR-like 339 557 IPR011990 GO:0005515
Tpr4g1927 643 Gene3D Tetratricopeptide repeat domain 386 570 IPR011990 GO:0005515
Tpr4g1927 643 Gene3D Tetratricopeptide repeat domain 141 385 IPR011990 GO:0005515
Tpr4g1927 643 Pfam Tetratricopeptide repeat 424 454 IPR019734 GO:0005515
Tpr4g1927 643 SMART tpr_5 388 421 IPR019734 GO:0005515
Tpr4g1927 643 SMART tpr_5 286 319 IPR019734 GO:0005515
Tpr4g1927 643 SMART tpr_5 320 353 IPR019734 GO:0005515
Tpr4g1927 643 SMART tpr_5 218 251 IPR019734 GO:0005515
Tpr4g1927 643 SMART tpr_5 252 285 IPR019734 GO:0005515
Tpr4g1927 643 SMART tpr_5 459 492 IPR019734 GO:0005515
Tpr4g1927 643 SMART tpr_5 149 182 IPR019734 GO:0005515
Tpr4g1927 643 SMART tpr_5 183 216 IPR019734 GO:0005515
Tpr4g1927 643 SMART tpr_5 422 455 IPR019734 GO:0005515
Tpr4g1927 643 SMART hat_new_1 232 264 IPR003107 GO:0006396
Tpr4g1927 643 SMART hat_new_1 266 298 IPR003107 GO:0006396
Tpr4g1927 643 SMART hat_new_1 436 471 IPR003107 GO:0006396
Tpr4g1927 643 SMART hat_new_1 473 505 IPR003107 GO:0006396
Tpr4g1927 643 SMART hat_new_1 334 366 IPR003107 GO:0006396
Tpr4g1927 643 SMART hat_new_1 402 434 IPR003107 GO:0006396
Tpr4g1927 643 SMART hat_new_1 300 332 IPR003107 GO:0006396
Tpr4g1927 643 SMART hat_new_1 197 230 IPR003107 GO:0006396
Tpr4g1927 643 ProSiteProfiles TPR repeat profile. 422 455 IPR019734 GO:0005515
Tpr4g1927 643 MobiDBLite consensus disorder prediction 92 116 - -
Tpr4g1927 643 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 15 637 IPR044624 GO:0003729|GO:0006397
Tpr4g1927 643 SUPERFAMILY TPR-like 101 398 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1927 - - mtr:MTR_4g122060 1072.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1927 4 20121025 20125641 Tpr4g1927 4 20121025 20125641 ECH