Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1915 ATGTGTCCTTCTGGCAGAACCCTCCGCCCACAACCTCCAACAACCGATTTCCGGCCGGCATTCGAAATTCTTGACACCGATTGCGATGGCAAAATAAGCCGAGACGATCTCCGCTCATTTTATGCAACAATAAGCGGAGGCGTCTCTGCTGATGCAATCGGTGCCATGATGTCTGTGGCTGACACAAACATGGACGGATTCGTGGAATACGAGGAATTCGAGCGGGTTGTTAGTGGAAACAATGAAAAGAGACCGTTAGGTTGTGGTGCCATGGAAGATGTGTTCAAGGTTATGGATAGAGATGGTGATGGTAAACTTAGTCATGAAGATTTGAAGAATTATATGAATTGGGCTGGTTTTCATGCTACCGATGAAGATATAAATGCTATGATTAAGTTTGGTGGTGGTGATCAAAACGGTGGCGTTAGCTTTGATGGTTTGATTCGTATATTAGCTCTTGATCATTTTGTCCCTGTTTATTGA 483 0.4431 MCPSGRTLRPQPPTTDFRPAFEILDTDCDGKISRDDLRSFYATISGGVSADAIGAMMSVADTNMDGFVEYEEFERVVSGNNEKRPLGCGAMEDVFKVMDRDGDGKLSHEDLKNYMNWAGFHATDEDINAMIKFGGGDQNGGVSFDGLIRILALDHFVPVY* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1915 160 Gene3D - 7 157 - -
Tpr4g1915 160 ProSitePatterns EF-hand calcium-binding domain. 99 111 IPR018247 -
Tpr4g1915 160 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Tpr4g1915 160 PANTHER TROPONIN 1 155 - -
Tpr4g1915 160 CDD EFh 16 78 IPR002048 GO:0005509
Tpr4g1915 160 PANTHER CALCIUM-BINDING PROTEIN CP1 1 155 - -
Tpr4g1915 160 CDD EFh 92 152 IPR002048 GO:0005509
Tpr4g1915 160 Pfam EF hand 92 115 IPR002048 GO:0005509
Tpr4g1915 160 ProSitePatterns EF-hand calcium-binding domain. 25 37 IPR018247 -
Tpr4g1915 160 SMART efh_1 126 154 IPR002048 GO:0005509
Tpr4g1915 160 SMART efh_1 52 80 IPR002048 GO:0005509
Tpr4g1915 160 SMART efh_1 90 118 IPR002048 GO:0005509
Tpr4g1915 160 SMART efh_1 16 44 IPR002048 GO:0005509
Tpr4g1915 160 ProSiteProfiles EF-hand calcium-binding domain profile. 91 121 IPR002048 GO:0005509
Tpr4g1915 160 ProSitePatterns EF-hand calcium-binding domain. 61 73 IPR018247 -
Tpr4g1915 160 SUPERFAMILY EF-hand 15 151 IPR011992 -
Tpr4g1915 160 Pfam EF-hand domain pair 16 77 IPR002048 GO:0005509
Tpr4g1915 160 ProSiteProfiles EF-hand calcium-binding domain profile. 12 47 IPR002048 GO:0005509
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1915 1 151 EF-hand Containing Proteins AT5G49480 56.962 3.31e-53 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1915 K02183 - gmx:100527230 229.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1915 4 20043600 20044366 Tpr4g1915 4 20043600 20044366 ECH