Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1906 ATGGCGAAGCACGAAGAACTTCCGATCCCGATTTACAATAACCTAGAGCTTGTCTACGGCGGAGGTTCATCGCTCGAAGAAGCTCAGCTTCGTTTCGATATTCTCAAATCCAAATTCAAGGAATTTTTCGGTCACACTCCTCAATTATTCGCTCGTTCACCTGGGAGAGTGAACTTGATTGGGGAACATATTGATTATGAAGGATATTCGGTGTTGCCTATGGCTATTCGTCAAGATACGATTATTGCTATTAGGAAAAATGAATCTGAAAAGGTTCTTAGGATCGCTAATGTCAATGATAAATATTCCATATGTACTTATCCTGCTGATCCTCTTCAGGAATTGGACTTGAAGAATCACAAGTGGGGCCATTATTTTATATGTGGGTACAAAGGTTTTTATGACTACGCAAAATTGAAAGGAGTGAATGTTGGCGAACCTGTTGGACTTGATGTTCTTGTTGATGGGACTGTGCCGACAGGTTCAGGACTATCAAGCTCTGCAGCATTTGTTTGCTCTTCCACGATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCAAAGAAAGAAATTGCACAAGTTACATGCGACTGTGAACGACATATTGGGACACAATCTGGTGGGATGGATCAGGCAATATCTGTCATGGCCAAGACTGGGTTTGCAGAATTGATTGATTTCAACCCAATTCGTGCGACAGATGTGCAACTGCCTGATGGTGGGACTTTTGTTATAGGGCATTCTTTGGCAGAGTCTCAGAAGGCTGTTACTGCTGCCACAAATTATAATAACAGGGTTGTTGAATGTCGTTTAGCTGCTATTGTGCTTGCTATAAAGCTAGGAATGAAACCAGCTGAGGCAATATCAAAAGTGAAAACACTGTCCGATGTTGAAGGGTTATGCGTATCATTTGCTGGTACTAAAAACTCATCTGATCCTGTACTTGCTGTAAAGGAATATTTGAAAGAAGAACCATATACAGCTGAAGAAATTGAAGCTGTTACTGGGGAAAAGCTGACTTTATTTTTGAATATTAATGCATCTTACTTGGACGTCATAAAAGCTGCAAAGCAATACAAGTTACATCAGAGAGCTGCTCACGTTTATTCAGAAGCCAAGAGGGTATATGCTTTCAAGGATGTTGTATCATCAAATCTAAGCGATGAGGAGAAGCTAAAGAAACTTGGTGACCTTATGAACGAGAGTCATTATAGCTGCAGTAATTTATATGAATGCAGCTGTCCGGAGTTGGAAGAACTTACAAAGGTCTCTCGCGACAATGGTGCTTTTGGGGCAAGGCTGACTGGAGCTGGATGGGGTGGTTGTGCTGTTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTCATCCTTAATTTGAAGGAACATTACTACCAACCTAGGATAGACAAGGGCGTCATTAAGAAGGACGATCTTGGTCTTTATGTATTTGCTTCCAAGCCATCAAGTGGTTCTGCCATCTTCAAGTTTTAG 1491 0.4131 MAKHEELPIPIYNNLELVYGGGSSLEEAQLRFDILKSKFKEFFGHTPQLFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIIAIRKNESEKVLRIANVNDKYSICTYPADPLQELDLKNHKWGHYFICGYKGFYDYAKLKGVNVGEPVGLDVLVDGTVPTGSGLSSSAAFVCSSTIAIMAAFDVNFPKKEIAQVTCDCERHIGTQSGGMDQAISVMAKTGFAELIDFNPIRATDVQLPDGGTFVIGHSLAESQKAVTAATNYNNRVVECRLAAIVLAIKLGMKPAEAISKVKTLSDVEGLCVSFAGTKNSSDPVLAVKEYLKEEPYTAEEIEAVTGEKLTLFLNINASYLDVIKAAKQYKLHQRAAHVYSEAKRVYAFKDVVSSNLSDEEKLKKLGDLMNESHYSCSNLYECSCPELEELTKVSRDNGAFGARLTGAGWGGCAVALVKESIVPQFILNLKEHYYQPRIDKGVIKKDDLGLYVFASKPSSGSAIFKF* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1906 496 Pfam GHMP kinases C terminal 391 464 IPR013750 -
Tpr4g1906 496 SUPERFAMILY GHMP Kinase, C-terminal domain 242 470 IPR036554 -
Tpr4g1906 496 Pfam Galactokinase galactose-binding signature 38 86 IPR019539 -
Tpr4g1906 496 Pfam GHMP kinases N terminal domain 151 216 IPR006204 GO:0005524
Tpr4g1906 496 PANTHER BNAA01G32760D PROTEIN 1 495 - -
Tpr4g1906 496 ProSitePatterns Galactokinase signature. 55 66 IPR019741 -
Tpr4g1906 496 Gene3D - 37 235 IPR014721 -
Tpr4g1906 496 ProSitePatterns GHMP kinases putative ATP-binding domain. 158 169 IPR006203 GO:0005524
Tpr4g1906 496 Gene3D - 261 411 - -
Tpr4g1906 496 SUPERFAMILY Ribosomal protein S5 domain 2-like 29 239 IPR020568 -
Tpr4g1906 496 PRINTS Galactokinase signature 55 73 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Tpr4g1906 496 PRINTS Galactokinase signature 149 167 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Tpr4g1906 496 PRINTS Galactokinase signature 363 377 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Tpr4g1906 496 PANTHER MEVALONATE KINASE/GALACTOKINASE 1 495 - -
Tpr4g1906 496 PIRSF Galactokinase 23 496 IPR006206 GO:0005524|GO:0005737|GO:0016301|GO:0016773
Tpr4g1906 496 TIGRFAM gal_kin: galactokinase 35 464 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Tpr4g1906 496 Gene3D - 236 465 - -
Tpr4g1906 496 PRINTS Mevalonate kinase family signature 53 77 - -
Tpr4g1906 496 PRINTS Mevalonate kinase family signature 156 178 - -
Tpr4g1906 496 PRINTS Mevalonate kinase family signature 198 217 - -
Tpr4g1906 496 PRINTS Mevalonate kinase family signature 431 448 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1906 K18674 - gmx:100803230 894.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1906 4 19962451 19968547 Tpr4g1906 4 19962451 19968547 ECH