Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1876 ATGGCGACTTTTCCATTGTTTCAGCGGGCACGGACCTCAATGCTTTCTTCGAAGCTACGAACAAATTATATCTATGGAAACAACTACTTCTGCAAAACCTTGAGTACTTCTGCAATCCCAAACGAGTATGGTAGATTCTCTCATCAACCACAACCACCTTCTGATCATAACAACACACCCTTTCAACCACCTCAACAACATTTCAATCATCATAATCAATTTCCGAATCATAATAATAATCAAAATGTTCAACAGGGTCGATTTCCTCCTCAACAGGGTTGGAATCCTCAAAATCGACCACCACCTCAAAATCCTAATTTCCGGCCACCACCTTCTCAAAACCCTAATTTCCGGCCACCCATTCGTCAAAATCCCAACTTTCAGCCACCCAATAGTCCCAATCGATCGAATAACCAGAATCAGTGGAACCCACAAAATGGTAACCCCAACCAATTTCAAAACCCTAATAACCAATTTCAAAACCCTAATAATCAATTCCAAAACCCTAATCAGTTGAATGAACGAGGTTCTGTTCAAGAACAAGCTCCTCCGCCTCCTTCAATTGTTGATTTGATACGTTTTTGTAGAGAGGGGAAGGTTAAAGAAGCGCTTGAATTGATGGAAAAAGGTATCAAAGCTGATGCTGATTGCTTTAATCTTTTGTTTGAGTTGTGTGGTAAATCGAAATCCGTTGAGGATGCTAAGAAAGTGCATGATTACTTTCTACAATCTACTTTTAGGAGTGATTTCAAGTTGCATAACAAGGTGATTGAGATGTATGGGAATTGTAAAAGTATGACTGATGCACGTAGGGTGTTTGATCATATGCCTAACAGAAACATGGATTCTTGGCATATGATGATTCGTGGCTATGCGAATAGTACTTTGGGAGATGAGGGTTTGCAGTTATTTGAGCAGATGAATGAGCTTGGTTTGGAGATAACTTCAGAGACTCTGCTTGCGGTGTTATCGGCTTGTGCCAGTGCAGAGGCTGTGGAGGATGGTTACATATATTTGGATTCCATGAAAAGCAAGTATGGAATTGAACCAGGAGTAGAGCACTACATGGGGCTTTTGGATGTTCTTGGACAATCTGGATACCTGAAAGAAGCCGAGGAGTTTATTGAGAAGCTGCCATTTGAGCCTACAGTGACAGTATTCGAGACACTCAAGAGTTATGCTAGAATTCATGGAGATATTGATCTTGAAGACCATTTTGAGGAGTTGATAGTTAGTCTTGACCCATCAAAGGCTGTTGTCAATAAGTTCCCTACACCACCTCCCAAAAAGTATACGGCAATTAGCATGCTCGATGGAAGGAACAGAATCATTGAGTATAAGAATCCTACTCTCTACAAGGATGATGAGAAGTTGAAGGCTTTGAGTAGTATGAAAGACTCTGCATATGTTCCTGATACAAAATATGTTCTTCATGACATTGATCCGGAAGCTAAGGAGCAGGCTTTGCTCTACCACAGTGAACGTTTAGCGATTGCCTATGGTCTTATTAGTACTCCTCCTAGAACACCTCTTAGGATTATCAAGAACCTTCGTGTCTGTGGTGACTGTCACAATGCCATCAAGATCATGTCTAGGATTGTAGGTAGGGAACTGATTGTCAGAGATAACAAAAGGTTTCATCATTTCAAGGATGGAAAATGCTCTTGTGGGGATTACTGGTGA 1683 0.4094 MATFPLFQRARTSMLSSKLRTNYIYGNNYFCKTLSTSAIPNEYGRFSHQPQPPSDHNNTPFQPPQQHFNHHNQFPNHNNNQNVQQGRFPPQQGWNPQNRPPPQNPNFRPPPSQNPNFRPPIRQNPNFQPPNSPNRSNNQNQWNPQNGNPNQFQNPNNQFQNPNNQFQNPNQLNERGSVQEQAPPPPSIVDLIRFCREGKVKEALELMEKGIKADADCFNLLFELCGKSKSVEDAKKVHDYFLQSTFRSDFKLHNKVIEMYGNCKSMTDARRVFDHMPNRNMDSWHMMIRGYANSTLGDEGLQLFEQMNELGLEITSETLLAVLSACASAEAVEDGYIYLDSMKSKYGIEPGVEHYMGLLDVLGQSGYLKEAEEFIEKLPFEPTVTVFETLKSYARIHGDIDLEDHFEELIVSLDPSKAVVNKFPTPPPKKYTAISMLDGRNRIIEYKNPTLYKDDEKLKALSSMKDSAYVPDTKYVLHDIDPEAKEQALLYHSERLAIAYGLISTPPRTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1876 560 Gene3D Tetratricopeptide repeat domain 189 345 IPR011990 GO:0005515
Tpr4g1876 560 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Tpr4g1876 560 TIGRFAM PPR: pentatricopeptide repeat domain 283 315 IPR002885 -
Tpr4g1876 560 Pfam PPR repeat 355 377 IPR002885 -
Tpr4g1876 560 Pfam PPR repeat 283 312 IPR002885 -
Tpr4g1876 560 Pfam PPR repeat 194 209 IPR002885 -
Tpr4g1876 560 PANTHER OS07G0578800 PROTEIN-RELATED 9 555 IPR045215 GO:0003723|GO:0009451
Tpr4g1876 560 Pfam DYW family of nucleic acid deaminases 469 560 IPR032867 GO:0008270
Tpr4g1876 560 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1876 Tpr-Chr4 19718985 19721252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1876 195 560 Glycoside Hydrolase AT3G49170 35.411 5.31e-69 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1876 - - lang:109333233 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1876 4 19718985 19721252 Tpr4g1876 4 19718985 19721252 ECH