Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1870 ATGGAGATCAAAGCTGGTTTATCAGCACTTGTCACTGGTGGTGCTTCTGGAATCGGTAAAGGTCTTGTCCTAGCTCTTGCAGAGAAGGGTGTATTTATCACAATTGTTGATTTTTCTGAAGAAAGGGGAAGACAAGTCGCGACCCTTGTTGAGAAAATTAATACCAAGTTTCATCCTAAGTTAGAACATCCATCTGTCTTATTTGTGAAATGTGATGTTACCAACTCAAGGGATCTAGCGGCTGCATTTGAGAAGCACGTTTCAACATTTGGAGGACTAGACATTTGTATTGCTAGTGCAGGGATTAGTAACCCTATACCATTCGATAAGGATGATACGGATGGCACTCGTTCATGGAGACACACTCTTAATGTGAATTTTATTGCAGTTTTAGACACCACCCGCCTTGCGACTAAAACCATGGAAGCTTTGAAAAGGCCTGGCACGATCATCAATCTGGGTTCTGCTTCTGGTCTTTATCCAATGTATTTCGACCCTATCTATAGTGGTTCTAAAGGTGGTGTTGTTATGTTTACTAGGGCACTTCGTTTTTACAAACGTAAAGGAATCAGAGTCAATGTGCTTTGCCCTGAGTTTGTTGAAACTGAGATGGGCTTAATGGTGGATCCCAAATTCATTGGTATGATGGGGGGCTTTGTACCTATGGAAATGGTGGTGAAAGGTGCTTTTGAGCTCATCACGGATGAGAGCAAAGCTGGTCATTGCTTATGGATTACTAATCGTCGTGGTCTGGAGTACTGGCCCACCCCATCAGAAGAAGAAAAGTACTCGATACGTTCTACACGTTTCAGGAGAAGAGCTGAATACAAATCTCCATCAATTAAACTACCTGAGAGTTTTGAAAAAGTAGTTGTTCATACCTTGAGTCACAACTTTCGGAATGCTACTGGCATAGTGAGAGCACCACTGAGATTACCTATCAAACCAAATCATGTTCTTGTGAAGATAATTTATGCTGGTGTAAATGCTAGTGATGTAAATTTTAGTTCAGGACGCTATTTTGGTGGCAATAACAAGGAGACTGCAGCTCGTCTTCCATTTGATGCAGGATTTGAGGCCGTGGGAATAATTGCAGCAGTTGGGGATTCTGTCACTGACTTGAAAGTTGGCTTGCCTTGTGCTTTCATGACTTTTGGAGGCTATGCTGAATTCACAATGATTCCTTCAAAATACGCTCTTCCAGTGCCTAGACCAGATCCAGAAGGTGTTGCCATGCTTACATCAGGATTAACAGCTTCAATTGCTCTCGACAAGGCAGGACAGATGGAATCTGGAAAAGTTGTCCTTGTTACTGCTGCGGCAGGAGGAACCGGTCAATTTGCTGTTCAGCTTGCAAAATTAGCAGGTAATACCGTGGTTGCCACTTGTGGTGGTGGGGAAAAGGCCAAGCTTCTGAAAGAATTGGGTGTTGACAGAGTCATAGACTATCGTAGTGAAGATATAAAAACGGTTCTAAAGAAAGAGTTCCCAAAAGGTATTGACATCATCTATGAGTCTGTTGGTGGTGACATGTTAAAATTGTGCTTGGATGCTTTGGCAGTCCATGGACGACTTATTGTCATTGGCATGATTTCTCAGTATCAAGGAGAAGATGGTTGGACACCGTCAAAATATCCTGGACTTTGTGAGAAGCTCTTGGCGAAGAGTCAAACTGTGGCTGGCTTTTTCCTGGTGCAATATAGTCACTTGTGGCAAGAACATCTTGATAGACTATTTGATGTTTACTCTAAGGGAAAACTAAAGGTTGCTGTGGATCCAAAGAGATTTCTAGGCCTGCATTCTGTTGCAGATGCTGTTGAGTATCTCCATTCAGGCAAAAGCGTTGGGAAGGTGGTTGTCTGTGTCGACCCAACCTTCGTTAATCAAGTTGCCAAATTATGA 1902 0.4269 MEIKAGLSALVTGGASGIGKGLVLALAEKGVFITIVDFSEERGRQVATLVEKINTKFHPKLEHPSVLFVKCDVTNSRDLAAAFEKHVSTFGGLDICIASAGISNPIPFDKDDTDGTRSWRHTLNVNFIAVLDTTRLATKTMEALKRPGTIINLGSASGLYPMYFDPIYSGSKGGVVMFTRALRFYKRKGIRVNVLCPEFVETEMGLMVDPKFIGMMGGFVPMEMVVKGAFELITDESKAGHCLWITNRRGLEYWPTPSEEEKYSIRSTRFRRRAEYKSPSIKLPESFEKVVVHTLSHNFRNATGIVRAPLRLPIKPNHVLVKIIYAGVNASDVNFSSGRYFGGNNKETAARLPFDAGFEAVGIIAAVGDSVTDLKVGLPCAFMTFGGYAEFTMIPSKYALPVPRPDPEGVAMLTSGLTASIALDKAGQMESGKVVLVTAAAGGTGQFAVQLAKLAGNTVVATCGGGEKAKLLKELGVDRVIDYRSEDIKTVLKKEFPKGIDIIYESVGGDMLKLCLDALAVHGRLIVIGMISQYQGEDGWTPSKYPGLCEKLLAKSQTVAGFFLVQYSHLWQEHLDRLFDVYSKGKLKVAVDPKRFLGLHSVADAVEYLHSGKSVGKVVVCVDPTFVNQVAKL* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1870 633 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 105 631 - -
Tpr4g1870 633 SUPERFAMILY GroES-like 303 436 IPR011032 -
Tpr4g1870 633 PANTHER BNAA08G02470D PROTEIN 105 631 - -
Tpr4g1870 633 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 408 586 IPR036291 -
Tpr4g1870 633 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Tpr4g1870 633 PRINTS Glucose/ribitol dehydrogenase family signature 91 102 IPR002347 -
Tpr4g1870 633 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Tpr4g1870 633 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Tpr4g1870 633 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Tpr4g1870 633 SMART PKS_ER_names_mod 294 620 IPR020843 GO:0016491
Tpr4g1870 633 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 432 453 IPR002364 GO:0008270|GO:0016491
Tpr4g1870 633 Pfam Zinc-binding dehydrogenase 443 577 IPR013149 -
Tpr4g1870 633 Gene3D - 411 589 - -
Tpr4g1870 633 CDD Mgc45594_like 286 621 - -
Tpr4g1870 633 Pfam short chain dehydrogenase 9 205 IPR002347 -
Tpr4g1870 633 Gene3D - 5 243 - -
Tpr4g1870 633 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 252 IPR036291 -
Tpr4g1870 633 Pfam Alcohol dehydrogenase GroES-like domain 317 379 IPR013154 -
Tpr4g1870 633 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 IPR002347 -
Tpr4g1870 633 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Tpr4g1870 633 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Tpr4g1870 633 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Tpr4g1870 633 Gene3D - 292 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1870 Tpr-Chr4 19569920 19577979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1870 10 204 Acyl Lipid Metabolism Gene Families AT1G24360 28.788 8.00e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1870 - - gmx:100797559 1067.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1870 4 19569920 19577979 Tpr4g1870 4 19569920 19577979 ECH