Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1778 ATGTCGGGGTTTCTTAATTCTTCTCTGAATGGATCTGCTTCAAATCTTCCAGATGGTGCTGGACGGTCTTTTGCCACGTCTTTCTCTAGTCAGTCTGGTGCAGCCTCACCAATTTTTCATCACACTGGAGGTATTCAAGGGTTGCACAATATTCATGGGAGCTTTAATGTTCCCAACATGTCTGGTACTCTCACACCAAGAAACTCTACAGTAAATAATATTCCATCTGGGGGTGTTCAACAACAAACAGGAAGCCTTTCAAGTGGAAGATTTGCATCCAACAATCTCCCTGTTGCATTATCACAGCTATCTCATGGAAGTTCATATGGACATTCAGGAGTCGCCAATAGAGGAGGTACAAGTGTTGTAGGAAACCTTGGATTTAGTAGTAGTACAAATGGAGTTGGTGGTTCTATTCCTGGGTTTCCTGCATCTATTGGAAATCGAAATGCTGTTCCAGGATTGGGAGTATCCCCAATTTCGGGAAATGCAGGCCCTCGAATCACTAGTTCTTTGGGAAATATGGTTGGTGGGGGGAATATTGGAAGGACTGGTGGAGGATTGTCTGTGCCTGGGCTTGGTTCTCGTCTAAATTTGAGTGTAAACAGTGGATCTGGTGGTTTAGGCATGCAAGGACAGAATCGATTGATGAGTAGTGTGCTTCCACAAGGATCTCCGCAGGTGATTTCAATGCCTGGGAATTCTTATCCCGGTGCTGGAGGCCTGTTTTCCCAAAGTCACGTTCATGGAGTAAATAACTTGAACACTATGAGGATGTTCAATGATGTAAATTCCAATGATAGTTCGCCTTTGGACCCAAATGAGTTCCCTCAACTGACAAGTCGTCCTAGTTCTGCTGGAGGATCTCAAGGGCAGCTGGGTTCTTTGCGGAATCAGGGTCTTGGCGTTAGTCCTATTGGTCAACAAAACCACGAGTTTAGCATTCAAAGTGAAGATTTCCCTGCATTACCAGGATTCAAAGGTGGTGTTAATGCAGATTATGCTATGGAGATGCACCAGAAAGAACAACTTCATGACAATGCTGTGCCAATGATGCAATCTCAGCATTTCTCTCAGATGGGGAGGTCTGCTGGGCTCAGTTTGGGGGGAACATATTCCTCCCATCGTACCCAACCGCAGCAACATAATCCTTCAGTCAGCAGTGGCAGTGTCTCGTTCTCATCTGTAAATAACCAGGATCTTCTCCATCAACATGGATCGGATATTTTTCCATCTTCTCATTCTGCCTATCATCCACAGACCAGTGGACCTCCTGGAATTGGATTAAGGCCTTCGAATTCTCCAAATACAGTTTCTGGTATGGGTTCATATGACCAGCTCATCCAGCAATATCAACAGCAAAAGAACCAATCCCAGTTTCATCTTCAAATGCCGTCTCTAAATCAGTCTTTTAGGGACCAGGACATGAAGTCTATGCAAGCTGCACAATCTACACCAGATCCATATGGTTTGCTTGGCCTGTTAAGTGTAATCAGGATGAATGATCTTGACCTGGCATCTCTTGCTCTTGGAATTGATCTTACCACACTTGGCTTAAATTTGAATTCATCAGAAAATCTTCACAAGACTTTTAAATCTCCATGGGCAGAAGAACCAGCTAAAGGTGATCCAGAGTTTAATGTGCCACAATGTTATTATACTGAACAACCACCTGCTTTAAATCATCTTTATTTTTCAAAGTTTACGGATGAAACATTGTTTTACATATTTTACAGCATGCCGAAAGACAAAGCACAATTATATGCTGCACATGAGCTTAACAAAAGAAAATGGTATTACCACACAGAGTTTCAATTGTGGTTTACGAGAGCACCTAACGTGGAGCCGCTGGTGAAAACACACACATACGAGAAAGGAACTTATCTCTTATTTGATCCAAGCACTTTTGAAACGGTTCACAAGGATAATGTTACTCTCTATTATGAAAAGCTGGATAGGTCTCATCTACCTCAACATTAA 1980 0.4278 MSGFLNSSLNGSASNLPDGAGRSFATSFSSQSGAASPIFHHTGGIQGLHNIHGSFNVPNMSGTLTPRNSTVNNIPSGGVQQQTGSLSSGRFASNNLPVALSQLSHGSSYGHSGVANRGGTSVVGNLGFSSSTNGVGGSIPGFPASIGNRNAVPGLGVSPISGNAGPRITSSLGNMVGGGNIGRTGGGLSVPGLGSRLNLSVNSGSGGLGMQGQNRLMSSVLPQGSPQVISMPGNSYPGAGGLFSQSHVHGVNNLNTMRMFNDVNSNDSSPLDPNEFPQLTSRPSSAGGSQGQLGSLRNQGLGVSPIGQQNHEFSIQSEDFPALPGFKGGVNADYAMEMHQKEQLHDNAVPMMQSQHFSQMGRSAGLSLGGTYSSHRTQPQQHNPSVSSGSVSFSSVNNQDLLHQHGSDIFPSSHSAYHPQTSGPPGIGLRPSNSPNTVSGMGSYDQLIQQYQQQKNQSQFHLQMPSLNQSFRDQDMKSMQAAQSTPDPYGLLGLLSVIRMNDLDLASLALGIDLTTLGLNLNSSENLHKTFKSPWAEEPAKGDPEFNVPQCYYTEQPPALNHLYFSKFTDETLFYIFYSMPKDKAQLYAAHELNKRKWYYHTEFQLWFTRAPNVEPLVKTHTYEKGTYLLFDPSTFETVHKDNVTLYYEKLDRSHLPQH* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1778 659 PANTHER NOT TRANSCRIPTION COMPLEX SUBUNIT VIP2 ISOFORM X1-RELATED 2 659 - -
Tpr4g1778 659 Pfam NOT2 / NOT3 / NOT5 family 529 651 IPR007282 GO:0006355
Tpr4g1778 659 Gene3D - 478 659 IPR038635 -
Tpr4g1778 659 PANTHER CCR4 NOT-RELATED 2 659 IPR040168 GO:0030015
Tpr4g1778 659 MobiDBLite consensus disorder prediction 371 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1778 Tpr-Chr4 18459184 18466551 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1778 K12605 - gmx:100807026 1004.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1778 4 18459184 18466551 Tpr4g1778 4 18459184 18466551 ECH