Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1771 ATGAATAAACCGAGAAACGATGCTGTGATCTTCACGAAGGAGCCTTTCATCGAGGATACAGGACCAAGCAAAATAGCTGGTATTTCGTTTTCCACGCTATCTGAAGCAGAAATCAGCAAAATGGGTGAAGTTCAAGTGTCGAAAACCAGTTACTATGATTCATTTCGAAAGGCTGATCCTGGTGGCTTGTTGGATCCTCACATGGGCCCTGCTAATAAGGGTACTAATATTCCTTGTGCAACATGCCACGGGAACTTTTCTGACTGTCAAGGGCACTTTGGATGCTTCCAACTTGATCAACCTGTTTTCAATGTCGGATACTTAAATACAATTGTGAAAATACTGAAGTGCATTTGCAAGCGATGTGCTCGTGTTCTCCTTGATGAAAATGAACGTAAAATGCATTTGGCGAAAATGAGAAACCCTAAATTGGATGGGCAGCAGAAGTTGCATGCGCTTGAAGCTGCAACGAAAAATTTTAAAAATCCCAATGCTATACAGTGCCCAAGATGTGGATATATGAATGGTAAAGTGAAGTACAATAAGCCAAACCTGAGCATTGTTCATGACCTCTCAGTTGCTAAGAATGAAGATGTCGCAGAGCTCGAATCATCTGTTTCTCATATAAACAATTATAGGTCATGCAAGGAAGTTTATAAACGAACTCTTAACCCTCACATGGTTCTTGACTTGTTTAAAAAGATGCACCGTGAGGACTGTGTATTACTTTATCTTGCCGAAAACCCAGAGAATCTCATCATGAAAAACATTGCTGTGCCACCTATAGCTATTCGACCTTCAGTCATGGTGGATGGAGCACAGAGTAATGAAAATGACATAACAGAGAAGCTAAAGAAAATAATCCAGACAAATGCTCTCATACAAGATGTATCAGTTGAGCCAGGCAAATATGAGGGTAATTATGTTATGCTTCAATTTGAGGCTGCTCAATACATAAATAGTGAAGTTAAAACATACAATCTACAACCGAGCAAGCCTTTAACCGGTTTTATTCAGCGCATTAAAGGGAAGCAAGGTCGTTTCCGTAGCAATCTGTCTGGAAAACGTGCTGAATATACTGGCAGGACAGTTATTTCACCCGATCCTAATCTAAAGATTACTGAGGTTGCAATACCGATTCATATGGCTCGCATTTTGACTTATCCTGAGCGTGTTACACATCACAACATAGAGAAGTTGAGACAATGTGTGAAAAATGGTCCTGATAAGTATCCTGGTGCAAAGGTGGTTAAAAATGCTGGAGGTGAATCATGGACTTTAAAAGTTAATCGTACGAAGCATGCTGATGAACTGAAATTTGGTGATATTGTCGAACGCCATTTAGAAGACGGAGACATTGTTCTTTTCAACAGGCAACCAAGCTTGCATCGGATGTCTATGATGTGTCATAGGGCAAGGGTTATGCCTTGGAGAACTTTGAGATTTAATGAATCTGTATGTAATCCATATAATGCTGATTTTGATGGTGATGAGATGAACCTACATGTTCCACAGACTGAGGAGGCACGAACAGAGGCTCTTTTGTTGATGACGGTGCAAAACAATTTGTGCACACCAAAAAACGGGGAAATTCTAGTTGCCTCTACACAAGACTTCTTAACCTCTTCCTTTCTCATAACTAGGAAAGATACTTTTTATGACCGTTCAACATTTTCACTTATTTGCTCATACATGGGGGACGGCATGGATCCTATTGATTTGCCAACTCCTGCAATTATTAAGCCAGTTGAACTCTGGAGTGGCAAACAGTTATTTAGCATTTTATTGCGCCCACATGCAAATGTGAGGGTCTATGTGAACCTCACTGTAAAGGAGAAAACACACAAGACAAAGAAGGATGACAGGAATAGAGTGGTGAAAACATTGTGCCCTTATGATGGATTTGTTTATTTTCGCAACAGTGAGCTAATCTCTGGACAACTTGGAAAGGCGACTTTAGGAAATGGCAATAAGGATGGACTTTTCTCTGTGTTACTAAGAGACTATAAATCAGATGCTGCTGCTTCTTGCATGAATCGTCTTGCTAAATTAAGTGCTAGGTGGATAGGTAATCATGGGTTCTCGATAGGCATTGATGACGTCCAACCTAAACAGACACTGATCAATAATAAGGTCAAAATAATTAATGGTGGTTACAATGAGTGTGATGGTTTTATAGAAGCTTTCAATGAAAGAAAGCTACAACCTGCACCTGGTTGTGATGCTGCTCAAACATTAGAGTCTATGATATTTAGTAAGTTGAATGGCTTGCGTGATAAGATAGCGGAGGTTTGCATGCAAACATTACACTGGAGAAATAGTCCATTGATCATGTCACAATGTGGTTCCAAAGGATCTCCTATCAATATCTGTCAAATGGTTGCCTGTGTTGGTCAACAGTCAGTTGGAGGTTGTCGTGCTGCTAATGGGTTCATAGATCGGAGTCTTCCTCATTTCCGTAAAAAAGCGCAAACCCCTGATGATAAAGGTTTTGTTAGGGATTCCTTTTTCGATGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGAGAGAAGGGCTCGTTGATACCGCGGTCAAAACTGCAGACACTGGATATATGTCCCGTAGATTAATGAAAGCTCTAGAGGACTTGTTTTTACATTATGATTACACTGTAAGAGATACCAATGGTGGTATAGTTCAGTTTTGTTATGGAGATGATGGCATGGATCCAGCAGGCATGGAAGGAAAAAATGGAAAACCATTAAATTTTGATCGGTTATTTCTCAGAAGCAAGGCCATATGTCCTAGTGATGGAGATGATGTAATCTTATCTTCTTCAGATATGCGGAAAATACTTCACGAGAAGCTTTCAGAAGTTGGTGTGTCCAAGTTAGAGGAGAAGGATACTTCAGGAAATGATATAATGTTAGAGGCGGGATTCTCTGCTGATTTTATAAAATCGCTACAATCATTTGTCGAAGAAAATACAAAACTAACAGAAACTATTACCGAGGACGATCCTAAACATCTGAAGAACCTGAATAACTTTATTCCAAGGATATCCGGGATCAGTCGCAGACAACTAGAGGTTTTTCTGGATATTTGTCTATCACGTTACCGTTTCAAAAAAATTGAGGCTGGAACTCCAATTGGTGCAATTGGAGCTCATAGTATTGGAGAACCTGGGACTCAGATGACTTTGAAAACTTTTCACTTTGCTGGGGTTGCAAGCATGAATGTTACTCTTGGAGTTCCTCGCATCATGGAAATTATAAATGGAGCATCAAATATTAAGACACCGATCATCACTGCGATACTTGAGACTGATGATAATATAAATATTGCAAGGATGGTGAAAGGTCGCATAGAAAAAACAACTTTAGGCCAGGTTGCAAAGAGTATCAAGGTTGTTGCCACTTCAAGATCAGCGGCACTTTTTATCTCACTGGACGAGAAGATAATCGAAGAGGCATATCTGAATATAGATTCTAATACTGTAAAAGAATCAATTTTGCAAACTGGAAAACTGAAGTTGAAGGAAAAGGAAATTAAGATTTTGGATCGTAAAAAGCTTCAAGTGGATGCCAAAGTGGATCCCAAAGCTGCTAACCAAAGTGAAGTCATTTTTCAACTTAATAATCTCAAAAATTTGCTTCCATCAGTTGTAGTAAAGGGTGTTAAAACTGCCGAACGAGTTGTCCTCGAAGTAGGTAATAAAGATGAAAAAGTTAAGAAGTTCAACTTACTGGTGGAAGGCAAGGGCCTTAAAGAGGTTATAGGAATTGAAGGGGTTGATGGACATAAAACTGTCAGTAATCATGTCACTGAAATGAATAACGTTCTGGGAATTGAAGCTGCCAGAGATTGTATCATTGGACAGATTCAGTATACAATGAAAGAACATGGAATGACTATAGACGTACGCCATATTATGCTTCTAGCAGATATGATGACTGTCAGGGGCCAAATCCTTGGAATGACAAGACATGGAATAGTGAAGATGGGCAGAAGTACATTGATGCTTGCATCATTTGAGAGTTCAACAGACTATCTTTTTGATGCATCCTTGCGTGGGATGAGTGACCCAATTGAAGGAGTGAGTGATTGCATAATAATGGGTAAACCAATTCAGATAGGCACCGGAATGATCGAGATCAAACAAAGGTTGGATCCTCCGGTGTTGCCTCGAGGAGCTGTTCCTATTCTATCTCAAGTTTGA 4209 0.3977 MNKPRNDAVIFTKEPFIEDTGPSKIAGISFSTLSEAEISKMGEVQVSKTSYYDSFRKADPGGLLDPHMGPANKGTNIPCATCHGNFSDCQGHFGCFQLDQPVFNVGYLNTIVKILKCICKRCARVLLDENERKMHLAKMRNPKLDGQQKLHALEAATKNFKNPNAIQCPRCGYMNGKVKYNKPNLSIVHDLSVAKNEDVAELESSVSHINNYRSCKEVYKRTLNPHMVLDLFKKMHREDCVLLYLAENPENLIMKNIAVPPIAIRPSVMVDGAQSNENDITEKLKKIIQTNALIQDVSVEPGKYEGNYVMLQFEAAQYINSEVKTYNLQPSKPLTGFIQRIKGKQGRFRSNLSGKRAEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVKNGPDKYPGAKVVKNAGGESWTLKVNRTKHADELKFGDIVERHLEDGDIVLFNRQPSLHRMSMMCHRARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALLLMTVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSTFSLICSYMGDGMDPIDLPTPAIIKPVELWSGKQLFSILLRPHANVRVYVNLTVKEKTHKTKKDDRNRVVKTLCPYDGFVYFRNSELISGQLGKATLGNGNKDGLFSVLLRDYKSDAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKQTLINNKVKIINGGYNECDGFIEAFNERKLQPAPGCDAAQTLESMIFSKLNGLRDKIAEVCMQTLHWRNSPLIMSQCGSKGSPINICQMVACVGQQSVGGCRAANGFIDRSLPHFRKKAQTPDDKGFVRDSFFDGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLFLHYDYTVRDTNGGIVQFCYGDDGMDPAGMEGKNGKPLNFDRLFLRSKAICPSDGDDVILSSSDMRKILHEKLSEVGVSKLEEKDTSGNDIMLEAGFSADFIKSLQSFVEENTKLTETITEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKILDRKKLQVDAKVDPKAANQSEVIFQLNNLKNLLPSVVVKGVKTAERVVLEVGNKDEKVKKFNLLVEGKGLKEVIGIEGVDGHKTVSNHVTEMNNVLGIEAARDCIIGQIQYTMKEHGMTIDVRHIMLLADMMTVRGQILGMTRHGIVKMGRSTLMLASFESSTDYLFDASLRGMSDPIEGVSDCIIMGKPIQIGTGMIEIKQRLDPPVLPRGAVPILSQV* 1403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1771 1402 SMART rpolaneu7 250 547 IPR006592 GO:0003677|GO:0003899|GO:0006351
Tpr4g1771 1402 Pfam RNA polymerase Rpb1, domain 5 839 1333 IPR007081 GO:0003677|GO:0003899|GO:0006351
Tpr4g1771 1402 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 17 1385 - -
Tpr4g1771 1402 CDD RNAP_III_Rpc1_C 1035 1380 IPR035698 -
Tpr4g1771 1402 Pfam RNA polymerase Rpb1, domain 4 729 832 IPR007083 GO:0003677|GO:0003899|GO:0006351
Tpr4g1771 1402 Pfam RNA polymerase Rpb1, domain 1 23 352 IPR007080 GO:0003677|GO:0003899|GO:0006351
Tpr4g1771 1402 PANTHER DNA-DIRECTED RNA POLYMERASE 12 1385 IPR045867 GO:0003899|GO:0006351
Tpr4g1771 1402 Gene3D - 879 929 - -
Tpr4g1771 1402 Pfam RNA polymerase Rpb1, domain 2 354 519 IPR000722 GO:0003677|GO:0003899|GO:0006351
Tpr4g1771 1402 Gene3D RNA polymerase Rpb1, domain 3 527 700 IPR042102 -
Tpr4g1771 1402 Gene3D - 1335 1380 - -
Tpr4g1771 1402 Gene3D - 701 818 IPR038120 -
Tpr4g1771 1402 Gene3D RNA polymerase II, clamp domain 16 140 IPR044893 -
Tpr4g1771 1402 Gene3D RNA polymerase ii 387 446 - -
Tpr4g1771 1402 CDD RNAP_III_RPC1_N 33 889 IPR035697 -
Tpr4g1771 1402 Gene3D - 819 877 - -
Tpr4g1771 1402 PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1 12 1385 - -
Tpr4g1771 1402 Pfam RNA polymerase Rpb1, domain 3 522 701 IPR007066 GO:0003677|GO:0003899|GO:0006351
Tpr4g1771 1402 Gene3D - 345 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1771 Tpr-Chr4 18371798 18399208 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1771 K03018 - gmx:100811292 1934.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1771 4 18371798 18399208 Tpr4g1771 4 18371798 18399208 ECH