Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1758 ATGAGTGACGAAGGAGAAAGGACTTGTCCTCTATGTGCCGAAGAGATGGATTTGACAGATCAGCAGTTGAAACCTTGTCGATGTGGTTATGAGATCTGTGTCTGGTGTTGGCACCACATAATGGACATGGCTGAGAAGGATGATACTGATGGGCGATGCCCTGCATGTCGTTCTCCTTATGATAAGGAAAAGATCGTTGGGACGGCGTCAAAGTGTGAAAGACTTCTGAGTGAAATTAATATGGAGAAAAAGGTGAAGAATCAGAAAGCGAAGTCTAAATCTTCTGATGGGCGGAAGCAGCTCAGTAGTGTGCGAGTGATTCAGCGAAACCTTGTTTACATAGTCGGATTGCCTCTGAATTTGGCAGATGAAGATCTTCTCCACAATCGGGAGTATTTTGGTCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCACGAACGGCAGCTGGTATCATTCAACAGTTTCCTAATGAAACTTGCAGTGTATATATTACTTATTCAAAGGAAGATGAAGCAATTCGGTGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGGACCACAAAATATTGTCATGCATGGCTCCGAAATTCGCCTTGCATCAACCCTGATTGTCTATATCTGCATGAGATTGGCTCTCAAGAAGATAGCTTTACAAAAGATGAAATAATTTCAGCTTACACTAGAAGTCGAGTTCAACAAATCACTGGTGCCACAAACAGTATGCAACGGCGATCAGGGAATGTATTACCTCCTCCTCTAGATGATTTCACAACCAATTCTACAGAAAAGACCATTGTTAAAAGTCCTCCAACTAACTCTTTACCTCTTCCCACAAATACAGTAAGAAGTTCGTCCCCAAATGGAATCAATGGGAGACATGTACCTCTTCCCACAAGTACTGCGTGGGGTACACAGGCTACAAGTTGTCTGTCCCCTGTTGGAGGTCTATCCTATCCATCTCTGTCAAAGCCAAAACCTGATACAGTCAATAGCACACTTGCATTTTCTACTGCTGTTACAGGGACAATTCAGGCTTCTGTGGCACCTTGTGATGGTTCAAGGAGGCCGCCATCGAGTGATGGGAGTCATAATACAATACCTAGGGTGAAAAGTGAATTGCCGAAACCTTTTAAACAATATAATAATAGCATGGACGGTCCGGCTAGTGCAGGCGAAGAAACTTCTGCTTGTGATGTTTCTCCTGTGCCTGTCAATTTGAACAGCGAGCTGTCTTCTCGACCATTGTCACGGGATAGTGATAGAGGCAATTGTACTATAGCAAACACATTAAATTCTACTAACATTACTGGACATTCTTTTAGCTCTGGTCCTGAGGAAGCAGCGTCTGCTACCAATGAAGTGATTCGGAATTTGTCTAGTGAGTTCTCTTCAATTAACATTGGTAGAAGTACCTCAAATGAACAATATGGTTTAAACAAACCTAGTAGCCCACCTTTTGATAATGTCTTGGCTAAATCTCAAATTCAAGAAGGATCGCAATATGATGTTGACAGATTTAAAGGCCCAATAACAACAAATGTGGTTGGTAAAACTTCCACATCAGATAATGGGGTTTTTAGTCCAAAGGAACAGTTTGGAGCGATATTGAATTCTCAATCTCAAGTAGTATCAGATACAGCTGATATCGAAGATGATGTAACATCTTTTGATAATCAAAGACTTAAGGATCCAGAAGTTTGTCTTTCTTATTTACCCCAGGCCACAAATTTCCTTAATGTATCTAAACTTTCTAGCCCTAGTCTAATGCAGTATGGTGAACCATGTACTGCTGGAAATGCTGGTTCTCTATCTTCTGATGATAGAGTTCGAGATGAATCTATTTTACATTCGTCTAGCATGTTCTGTAATGGCTATCCTGAGAAATTGATCGGTGGCAGTTCTAATGGTTTGCTTCATGATGAAAGAAACATGCAAAGTATCGGAAGGTTAGTTGGTGATGCTGTTAATGCTGGGTGTGATGCTGGAATTGATAAGGGAGAAAGTAGCATTATCTCAAACATTCTGTCCATCGATTTTGATCCCTGGGATGACTCCCTAACATCACCTCATAACATAGTGAAGTTGTTGGGTGACAATACTGATAGCCAGCCAAGTCCTTTAAAAAAATCTAGTTCTTGGAAAGTTCAAAGTAACAATCAGTCGAGGTTCTCTTTTGCAAGGCAGGAAGAGTCTAAAATTCAAAATTTTGATGTGCATCCGTCTTATGCTGTCAGCCAGCAACAGCCCAAGAGCCACACACTCAACCAGAATCTGGCAGAAAGAGATTTATATACGGATAATTTGGGAATTGCAAATGGCTTTCCTACCAGTAACTTCGAGGAAGCTGAAAATATAGGCAGTGTTAATTCCATTGCTTCTTCCAATAAGCTTTCTGCTATTTCAAGAGCACAAGTATCAGCTCCGCCAGGATTTTCAATTCCAAGCAGGCTGCCACCTCCTGGTTTTTCTTCGCACGAGAGATCAGAGCAGACTTTTGACTCCCTATCATCTGGGAATTCATTACTTGACAATTCTTCCTTTATGAGAAATTCACATCAGACACTCTCAGCTGGAAATATTGGTGGCACAGGTGACATTGAATTTATGGATCCTGCTATTTTGGCAGTTGGCAAGGGGAGACTTCAAGGTGCACAAAACAGCCAATCACTGGACATACAATCAAATTTCATGCCACAATTAAATTACTTCGACAATGAAGCCAGACTACAATTCCTGATGCAAAGATCTCTCGCACAGCAGCAAAACCTTAGATTTTCCGAACTTGGGAATACTTTTTCACAACTTGGTGATTCATATGGTATTTCTTCAAGGTTAGACCAATCTCAAGTCAGTAACCTAGCCCCTTTCCCTCAGTTGTCTATGCAGCAGTCTACAAATGCAATCTTGTCAAATGGCCAATGGAATGGGTGGAATGGGGTGCAGAGTGGGAATGGTCTTGGCGTGGCTGAACTTCTGAGGAATGAAAGACTTGGATTGAACAAGTTTTACCCAGGATATGATGATTCAAAATATCGGATGCCAAATTCTGGGGATATCTACAACAGAACATTTGGGATGTGA 3108 0.4131 MSDEGERTCPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPYDKEKIVGTASKCERLLSEINMEKKVKNQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLHNREYFGQYGKVLKVSMSRTAAGIIQQFPNETCSVYITYSKEDEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNSPCINPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQQITGATNSMQRRSGNVLPPPLDDFTTNSTEKTIVKSPPTNSLPLPTNTVRSSSPNGINGRHVPLPTSTAWGTQATSCLSPVGGLSYPSLSKPKPDTVNSTLAFSTAVTGTIQASVAPCDGSRRPPSSDGSHNTIPRVKSELPKPFKQYNNSMDGPASAGEETSACDVSPVPVNLNSELSSRPLSRDSDRGNCTIANTLNSTNITGHSFSSGPEEAASATNEVIRNLSSEFSSINIGRSTSNEQYGLNKPSSPPFDNVLAKSQIQEGSQYDVDRFKGPITTNVVGKTSTSDNGVFSPKEQFGAILNSQSQVVSDTADIEDDVTSFDNQRLKDPEVCLSYLPQATNFLNVSKLSSPSLMQYGEPCTAGNAGSLSSDDRVRDESILHSSSMFCNGYPEKLIGGSSNGLLHDERNMQSIGRLVGDAVNAGCDAGIDKGESSIISNILSIDFDPWDDSLTSPHNIVKLLGDNTDSQPSPLKKSSSWKVQSNNQSRFSFARQEESKIQNFDVHPSYAVSQQQPKSHTLNQNLAERDLYTDNLGIANGFPTSNFEEAENIGSVNSIASSNKLSAISRAQVSAPPGFSIPSRLPPPGFSSHERSEQTFDSLSSGNSLLDNSSFMRNSHQTLSAGNIGGTGDIEFMDPAILAVGKGRLQGAQNSQSLDIQSNFMPQLNYFDNEARLQFLMQRSLAQQQNLRFSELGNTFSQLGDSYGISSRLDQSQVSNLAPFPQLSMQQSTNAILSNGQWNGWNGVQSGNGLGVAELLRNERLGLNKFYPGYDDSKYRMPNSGDIYNRTFGM* 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1758 1035 SMART rrm2_1 111 192 IPR003954 GO:0003676
Tpr4g1758 1035 SUPERFAMILY RING/U-box 3 66 - -
Tpr4g1758 1035 MobiDBLite consensus disorder prediction 355 387 - -
Tpr4g1758 1035 CDD RRM_CNOT4 105 204 IPR034261 -
Tpr4g1758 1035 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 1035 - -
Tpr4g1758 1035 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Tpr4g1758 1035 CDD mRING-HC-C4C4_CNOT4 9 58 IPR039515 -
Tpr4g1758 1035 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Tpr4g1758 1035 MobiDBLite consensus disorder prediction 707 729 - -
Tpr4g1758 1035 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Tpr4g1758 1035 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Tpr4g1758 1035 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Tpr4g1758 1035 SMART rrm1_1 111 192 IPR000504 GO:0003723
Tpr4g1758 1035 Gene3D - 111 192 IPR012677 -
Tpr4g1758 1035 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Tpr4g1758 1035 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1035 IPR039780 GO:0004842|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1758 Tpr-Chr4 18162137 18171913 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1758 K10643 - gmx:100801880 1535.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1758 4 18162137 18171913 Tpr4g1758 4 18162137 18171913 ECH
Tpr4g1758 4 18162137 18171913 Tpr7g4344 7 52188589 52199645 PCT