Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1728 ATGTTATCTTTTGGTAGAAATTGCTTCAAATATTGTAGTACCCACTTCACCTCAAATGAAAACCTATGTTTGCAGAAGAAATTTCCTAAGCTATTTGGGGAAAATTCTCAATTTTCTGTTTTGATTCCACTTATTTGCATAAATTCTCATTATCATTCAACTAAAGCTCCTTCAAGGTCTTATAGAAGAAGAGCTCGAAATCGGTTTTTGAAAGCCAACAAACCTATTCTTGACCAAGCAAAGTTTCAATTTGCACAGTCTCAACTTCTCCCTAGGTTCACTCCTGAAGAATTATGCAATGTTATTGCTAATCAACGTGACCCGTTGGTTTGTTTAGAACTTTTTCATTGGGCGTCTCACCAGCCTAGGTTTCGACACGATGTGTCCACTTTTCATGTTACTGTAAAGAAGCTCGGTGATGCAAAAATGTACCAAGAAATGGATGATATTGTGAACCAATTGCTTGCGGTTCCATCTATTGGGTCCGAGGCGTTGTTTAATATGATCATATATTATTTCACTGAGGCGCGGAAGTTGACTAGAGCTGTTGTTGTGTTTAAGCATATGAAGAGTAGTAGAAATCCAAATTTCAGTTTTAGGCCTTCGATTAGAACATATAATATTCTTTTTGGCGCACTTTTGAGTAAAGGATACAACACGGATATAAACCTTGTGTATATGGAAACTATGAGAGGTCTATTTAAGCAAATGGTTAATGATGGGATAGAACCTGATGTTTTTTCATTAAATTCTATGATAAAAGGTTACGTGCTTTCTCTTCATGTTAATGATGCGTTAAGGATATTTCATCAGATGGGTGTGGTTTATGATTGCCAACCCAATTCTTTAACTTATGATTACTTGATTCATGGGTTGTGTGCCAAAGGAAGAACAGAGAATGCCAAAGAATTGTATCATGAAATGAAGACTAAAGGTTTTGTCCCGAATAGTAAAACTTATAATTCGCTTGTCAGTTCTTTGGCACTCGTCGGAGAAGTTGAGGAGGCAGTAAATTTTCTATGGGAGATGACTGAAAAGCAAAGATCAGTTGATTTTATTACATATAGGACTGTATTGGATGAGATATGTAGACGAGGAAGAGTTGAAGAGGCCATGAAGTTTTTGCAGGAGTTGCAAGAAAAGGACCTTGTAGATGGCCATACTTACAGGAAGCTTCTGCACGTGCTTGAAGATGATTATGGGAATTCAGAAAACAGAATTGATTCAGGTCCAGCTTTAATTCCACCCGGAAAATCTTGGTAA 1263 0.3698 MLSFGRNCFKYCSTHFTSNENLCLQKKFPKLFGENSQFSVLIPLICINSHYHSTKAPSRSYRRRARNRFLKANKPILDQAKFQFAQSQLLPRFTPEELCNVIANQRDPLVCLELFHWASHQPRFRHDVSTFHVTVKKLGDAKMYQEMDDIVNQLLAVPSIGSEALFNMIIYYFTEARKLTRAVVVFKHMKSSRNPNFSFRPSIRTYNILFGALLSKGYNTDINLVYMETMRGLFKQMVNDGIEPDVFSLNSMIKGYVLSLHVNDALRIFHQMGVVYDCQPNSLTYDYLIHGLCAKGRTENAKELYHEMKTKGFVPNSKTYNSLVSSLALVGEVEEAVNFLWEMTEKQRSVDFITYRTVLDEICRRGRVEEAMKFLQELQEKDLVDGHTYRKLLHVLEDDYGNSENRIDSGPALIPPGKSW* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1728 420 Pfam PPR repeat 248 272 IPR002885 -
Tpr4g1728 420 Pfam PPR repeat 351 377 IPR002885 -
Tpr4g1728 420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Tpr4g1728 420 Gene3D Tetratricopeptide repeat domain 223 350 IPR011990 GO:0005515
Tpr4g1728 420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Tpr4g1728 420 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN 29 408 - -
Tpr4g1728 420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Tpr4g1728 420 TIGRFAM PPR: pentatricopeptide repeat domain 248 281 IPR002885 -
Tpr4g1728 420 TIGRFAM PPR: pentatricopeptide repeat domain 353 383 IPR002885 -
Tpr4g1728 420 TIGRFAM PPR: pentatricopeptide repeat domain 284 317 IPR002885 -
Tpr4g1728 420 PANTHER ATPASE EXPRESSION PROTEIN 3 29 408 - -
Tpr4g1728 420 Pfam PPR repeat family 280 328 IPR002885 -
Tpr4g1728 420 Gene3D Tetratricopeptide repeat domain 70 222 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1728 Tpr-Chr4 17804384 17808837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1728 127 394 Glycosyltransferase AT1G05670 22.963 1.81e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1728 - - gmx:102666460 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1728 4 17804384 17808837 Tpr4g1728 4 17804384 17808837 ECH