Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1706 ATGGCGGCGAGTGCTAAACTAACTGAAGTCCTACAAACACTCAGCGCTCAGGATTCAACCATAGAATCAAATCCAACGGTTCCACAACACGCACAAATTCACGAACTAAACGACGACGTTGTAACGACTGAGAAACGGAAAAGAGAAGACGCCGACGAAAACGCCGACGCCGATGGAAAACCTTCTCTCCATCCGATGTGGAAGACTAGTCTCTGTTCTTACTTCAGGAAACATGCTTCATGTAGTCACGGTGATACTTGCCGTTACGCGCATAGCGAAGAGGAGCTCCGGCAACGTCCGGATAACACGTGGGACCCGACTTCGGAGCGAGGGAAAAAGGCATTGAAAACTGTGACAGGAGAGAAAATTGCTGTTAAAGACGGTGTTATGATGACGGAGCTTGTTGGTGATGACGTTGATGGTGAAGGTGGTGATGACGGTTTTGCAACTAACCAAGCGCTCAGTAAATGTTTAGTGCATTTGCCGATGAAATGGAGTTCTGAGAATTTGAGGAATTTCCTCAATGAGCAGGGTATACCTTTTAAGCATGCAAAGACAAAGAAAGGTATGGCAATTGGTTTCGTTACTTTTGAAGATGAAGAACAATTGAAGAGTTCGTCTGAGGCTTTACAAGGAAAACAAATTGGTAACAAAACGTTAGAGGTAGCTGATGTTAATCCTCGATCATTTGAGAAGATAAGTAACGCTAACATTCCTTCAAGTGGGACATTGGGTGATGTCACAAATGATGATAATTTGGTAGTTGATGGTTCCGAGTCAAAAAAAAGAAGCTCACGTGAAGTTGTGACTCCTCTGGCGCATTTATCCTATGCTGATCAGTTGGAACAGAAAAAATACTCTCTCATGCAGCTTCTCAAAAAACTTCCTAGAAATGCTCGTAAAGCTTGTCCAAATGGTGTTCCAGTTCCTGAATGGATTCTCAAGTCTAGGGAAATAGGTGGTCTTCCATGCAATCTGGAGGGTATTATTGAATCACCAATTGTAAATGGATATCGTAATAAATGTGAATTTTCAATTGGATATTCTATGGAAGGCAAAGCAACAGTGGGCTTCAGCCTTGGAAATTTTAGGGAAGGTGTAACAGCAGTTGAAGAACCAGTAGACTGCCCAAATATTTCTACCATTGCGTGTAAATATGCTGCTATCTTCCAAGAATTTCTACAGCACACTGATTTACCAGTTTGGAACAGATTTAAAAACTGTGGATTTTGGCGTCAATTGACGGTTCGAGAAGGGAGGTCAAACGGGAATGTTGTTGATGGTGAAACTTTTGACGGTATTGCAGAAGTCATGCTTATTGTGCAGGTTTCTACTGCAAGTTTTGATGATGCACAAGTAGATGCTGAATTTAAGAGGCTTGCTCAGGCATTTGTTACAGGAGCTACCTCTCATTGTCCAACTTTACCCCTTACAGCTCTGATTGTTCAGGATCACCAAGGAATATCCAATGTAGCACCATCTGATGCACCATTGCATTCACTTCCCATAGCAGCTGGTGATCCTGAGAGGGATGTAAACATTAGTGCAGCAGATGTGAGAATCCATGATTATATTAGCAGTCTCCGGTTCTCTATATCTCCAACCTCATTTTTTCAGGTTAACACACTTGCTGCCGAGAAATTATACTCCCTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACATTGCTATTCGATGTTTGCTGTGGGACTGGAGCAATTGGCTTGACATTAGCACATCGTGTTGGAATGGTGATTGGAATAGAAATGAACGCTGCTGCTGTATCTGATGCTCATAAGAATGCCGAGAATAATGGCATAAAAAACTGTAGATTTATTTGTTCAAAGGCAGAGCAAGTTATGGGATCTCTGTTAAAGGAATACCTTGAAGTGCCCAAGGAACAAGATGACGTTCCTGAAAACAATGCCTGCCCAGAACCCGAAAATGGTGAAAGCGCATCTCACCGTTCTGAAAATAACAATTCAGAAATTGAAAATGATGTTCCAACGGGTAGCACTTCTGAAAATGGGAATACTTCCATGAAACAGTTTAAAAATGTTGTTGCCATTGTTGATCCTCCTCGTGCTGGACTTCATCCAACTGTATTAAAAGCTTTAAGAACTCATACACTCCTGCGGAGGCTCGTTTATATATCATGTAATCCTGAAAGTTTGGTGGCAAATGCTATTGAGCTTTGTACGCCATCCCCAACAGAAATTGAGAGAGGAAATAAAGACAACAGAGGATGGAGACGGATGAGTAGTGCTGGTCTAGCTCGGCATAGGGCAAAGTCCATGCCCATTTCAGAAGCCTTCAAACCCGTAAAAGCCATGGCTGTTGATCTTTTTCCACATACTCCACATTGCGAATTGGTTATGCTCCTTGAGAGGTAG 2394 0.4252 MAASAKLTEVLQTLSAQDSTIESNPTVPQHAQIHELNDDVVTTEKRKREDADENADADGKPSLHPMWKTSLCSYFRKHASCSHGDTCRYAHSEEELRQRPDNTWDPTSERGKKALKTVTGEKIAVKDGVMMTELVGDDVDGEGGDDGFATNQALSKCLVHLPMKWSSENLRNFLNEQGIPFKHAKTKKGMAIGFVTFEDEEQLKSSSEALQGKQIGNKTLEVADVNPRSFEKISNANIPSSGTLGDVTNDDNLVVDGSESKKRSSREVVTPLAHLSYADQLEQKKYSLMQLLKKLPRNARKACPNGVPVPEWILKSREIGGLPCNLEGIIESPIVNGYRNKCEFSIGYSMEGKATVGFSLGNFREGVTAVEEPVDCPNISTIACKYAAIFQEFLQHTDLPVWNRFKNCGFWRQLTVREGRSNGNVVDGETFDGIAEVMLIVQVSTASFDDAQVDAEFKRLAQAFVTGATSHCPTLPLTALIVQDHQGISNVAPSDAPLHSLPIAAGDPERDVNISAADVRIHDYISSLRFSISPTSFFQVNTLAAEKLYSLAGDWACLGPDTLLFDVCCGTGAIGLTLAHRVGMVIGIEMNAAAVSDAHKNAENNGIKNCRFICSKAEQVMGSLLKEYLEVPKEQDDVPENNACPEPENGESASHRSENNNSEIENDVPTGSTSENGNTSMKQFKNVVAIVDPPRAGLHPTVLKALRTHTLLRRLVYISCNPESLVANAIELCTPSPTEIERGNKDNRGWRRMSSAGLARHRAKSMPISEAFKPVKAMAVDLFPHTPHCELVMLLER* 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1706 797 MobiDBLite consensus disorder prediction 36 62 - -
Tpr4g1706 797 Gene3D - 157 228 IPR012677 -
Tpr4g1706 797 MobiDBLite consensus disorder prediction 654 679 - -
Tpr4g1706 797 CDD AdoMet_MTases 566 620 - -
Tpr4g1706 797 Pfam Methyltransferase domain 564 622 IPR025714 -
Tpr4g1706 797 Pfam tRNA (Uracil-5-)-methyltransferase 681 732 IPR010280 GO:0006396|GO:0008173
Tpr4g1706 797 SUPERFAMILY RNA-binding domain, RBD 160 233 IPR035979 GO:0003676
Tpr4g1706 797 Gene3D Vaccinia Virus protein VP39 508 796 IPR029063 -
Tpr4g1706 797 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A 81 797 - -
Tpr4g1706 797 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 67 93 IPR000571 GO:0046872
Tpr4g1706 797 ProSitePatterns RNA methyltransferase trmA family signature 1. 692 724 IPR030390 -
Tpr4g1706 797 MobiDBLite consensus disorder prediction 37 59 - -
Tpr4g1706 797 MobiDBLite consensus disorder prediction 633 679 - -
Tpr4g1706 797 ProSiteProfiles Zinc finger C3H1-type profile. 66 94 IPR000571 GO:0046872
Tpr4g1706 797 Gene3D - 61 99 - -
Tpr4g1706 797 CDD RRM_SF 157 222 - -
Tpr4g1706 797 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 220 IPR000504 GO:0003723
Tpr4g1706 797 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 270 797 IPR029063 -
Tpr4g1706 797 SMART c3hfinal6 66 93 IPR000571 GO:0046872
Tpr4g1706 797 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 81 797 IPR045850 -
Tpr4g1706 797 SUPERFAMILY CCCH zinc finger 64 98 IPR036855 GO:0046872
Tpr4g1706 797 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 268 797 IPR010280 GO:0006396|GO:0008173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1706 K15332 - tcc:18590864 1051.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1706 4 17581899 17587684 Tpr4g1706 4 17581899 17587684 ECH