Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1670 ATGGCCGGTAAAAGTGGAATGACTCCGGCGACATACACGCCGTCTCCGACAACCGGTAAAAAGAAACCAGCAATTATCAAAGAAGATTGGACCCGACCTGACGGTCGTGGCTTCCACCAGTGTAGACCCGCCTTTTTCAGGACTGGTGCTGTGAATGCTGCATCAGGATCAGCTTATGCTGAGTTTGGAAATACCAAGGTCATTGTATCTGTATTTGGGCCACGAGAGAGCAAGAAGGCAATGCTTTACAGTGATACGGGGCGACTAAATTGCAATGTCAGCTATACAACGTTTTCAACTCCGGTTCGTGGACAGGGTTCAGACCACAAAGAGTACAGTTCGATGCTTCAGAAAGCTTTGGAGGGTGCAATAATATTGGAAAGTTTCCCCAAGACCACTGTGGATGTGTTTGCATTGGTGCTGGAATCTAGTGGCAGTGATCTCCCAGTTGTCATATCAGTTGCTAGTCTTGCCTTGGCAGATGCTGGAATACTGATGTATGACCTTGTTACCTCAGTTTCTGTGTCATGTCTCGGTAAGAACCTCATCATTGATCCTATTTCGGAGGAGGAAAACTGCCAAGATGGAAGCTTAATGATCACATGCATGCCTTCTCGCTATGAAGTTACCCAATTGACAGTTACTGGTGAATGGTCCGCCCCAAAGATTAGTGAGGGGATGCAGCTGTGCTTGGATGCTTGTAAAAAGCTTGCAAAGATTATGAGGTCGTGTTTGAAAGAATCCGCTTCTGATGCACAGGGATTGGAGAATGAGAGTTCTTAG 783 0.4649 MAGKSGMTPATYTPSPTTGKKKPAIIKEDWTRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMLYSDTGRLNCNVSYTTFSTPVRGQGSDHKEYSSMLQKALEGAIILESFPKTTVDVFALVLESSGSDLPVVISVASLALADAGILMYDLVTSVSVSCLGKNLIIDPISEEENCQDGSLMITCMPSRYEVTQLTVTGEWSAPKISEGMQLCLDACKKLAKIMRSCLKESASDAQGLENESS* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1670 260 SUPERFAMILY Ribosomal protein S5 domain 2-like 28 195 IPR020568 -
Tpr4g1670 260 PANTHER EXOSOME COMPLEX COMPONENT 15 249 - -
Tpr4g1670 260 PANTHER EXOSOME COMPLEX COMPONENT MTR3 15 249 - -
Tpr4g1670 260 SUPERFAMILY Ribonuclease PH domain 2-like 166 250 IPR036345 -
Tpr4g1670 260 Gene3D - 19 254 IPR027408 -
Tpr4g1670 260 CDD RNase_PH_MTR3 41 247 - -
Tpr4g1670 260 MobiDBLite consensus disorder prediction 1 23 - -
Tpr4g1670 260 Pfam 3' exoribonuclease family, domain 1 40 164 IPR001247 -
Tpr4g1670 260 Pfam 3' exoribonuclease family, domain 2 168 229 IPR015847 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1670 Tpr-Chr4 17214506 17218169 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1670 K12587 - gmx:100816271 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1670 4 17214506 17218169 Tpr4g1670 4 17214506 17218169 ECH