Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1626 ATGGCACTCTCAGCTTTAGCAACAACAGCAACACTTTTATCATCATCAAGAAACAAATCTCCAAATCCCATTATCTTTTCATCTTTCACAAAAAAGTCACAATTTTTGACAAAACAAACACGACCCAGAAACAGAAAAAACTTTTCATTAACAGTTAGAAGCGTTGCAGCACCACCCACAAAAACTGAACCAAATCAATCCCCAGAAGCTGAAAGGAACGAAATTGATGAAGAATTTGATGATGAGAGTTCATCATCGAAGTTTTCGTGGAGAGATCATTGGTACCCAGTTTCGTTAATCGAAGATCTGGATCCTAGCTTGCCTACACCGTTTCAGCTTCTGGGTCGTGAAATTGTTCTTTGGTTTGATAATTCCAATTCTCAATGGGTTGCTTTTGATGATAAATGTCCTCACCGTCTTGCCCCTTTATCTGAAGGAAGGATAGATGAGGTTGGAAACTTGCAGTGTTCTTATCATGGGTGGTCTTTTGATGGACGTGGAAGTTGTGTTGTGATTCCTCAGGCTTCACCGGAAGGTCCCGAGGCGCGTGCTATTGGGTCTCCTAGAGCTTGTGCTACTAGGTTTCCTACCTTGGTGTCTCAAGGGTTGCTCTTTGTTTGGCCTGATGAGAATGGTTGGGAGAAAGCAAATGCATCCAAACCTCCATTGTTGCCTGATGATTTTGTAAAACCCGAGTTTGCAACGGTGAACATTCAGCGTGATCTGTTCTATGGCTACGATACTCTCATGGAGAATGTCTCTGATCCTTCTCACATTGATTTTGCTCATCACAAGGTTACAGGAAGGAGAGATAGAGCCAAGCCTCTTCCATTCAAGATGGATTCACGTGGTTCATGGGGATTTTCAGGAGCTAATGAAGGGAATCCACGGATCAGTTCCAAATTTGTTGCACCATGTTATTACATCAACAAGGTTGAGATTGATACCAAGCTCCCAATAGTTGGTGACCAGAAATGGGTAATATGGATATGTTCCTTCAACGTCCCCATGGCACCCGGTAAGACTCGCTCCATTGTTTGCAGTGCTCGAAATTTCTTCCAGTTCACAGTTCCAGGTCCTGAATGGTGGAAAGTGGTTCCTAGATGGTATGAACATTGGACTTCAAACAAGGTATATGATGGAGACATGATTGTCCTTCAAGGTCAAGAGAAAATATTTCTTGCAGAAACCGAACAAGGCGGCGACATTAACAAACAGTACACAAGCCTCACCTTCACGCCAACACAAGCTGATCGTTTTGTGTTGGCATTTAGAAATTGGCTGAGACGACACGGAAATGGCGAACCTGAATGGTTCAGCAAGAGCAGCCAGCCATTGCCTTCAACCGTACTATCAAAACGTCAGATGTTGGATAGATTTGAACAGCACACACTAAAGTGTTCATCTTGTAAAGGAGCGTATGAGGGATTCAAAACATGGCAGAAAATCCTGATCGGTGCAACAGTTGTGTTTTGCGCGACTTCTGGGATTCCATCAGATATTCAGCTGCGTGCAATTTTGGCCGGACTCGCGGTTGTCAGCGCAGCCTTAGCTTTTGCCATAAACCGACTAGAAAAGAATTTTGTATTCGTCGATTATGTGCACGCTGAAATCGATTGA 1620 0.4346 MALSALATTATLLSSSRNKSPNPIIFSSFTKKSQFLTKQTRPRNRKNFSLTVRSVAAPPTKTEPNQSPEAERNEIDEEFDDESSSSKFSWRDHWYPVSLIEDLDPSLPTPFQLLGREIVLWFDNSNSQWVAFDDKCPHRLAPLSEGRIDEVGNLQCSYHGWSFDGRGSCVVIPQASPEGPEARAIGSPRACATRFPTLVSQGLLFVWPDENGWEKANASKPPLLPDDFVKPEFATVNIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKMDSRGSWGFSGANEGNPRISSKFVAPCYYINKVEIDTKLPIVGDQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFTVPGPEWWKVVPRWYEHWTSNKVYDGDMIVLQGQEKIFLAETEQGGDINKQYTSLTFTPTQADRFVLAFRNWLRRHGNGEPEWFSKSSQPLPSTVLSKRQMLDRFEQHTLKCSSCKGAYEGFKTWQKILIGATVVFCATSGIPSDIQLRAILAGLAVVSAALAFAINRLEKNFVFVDYVHAEID* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1626 539 CDD Rieske_RO_Alpha_PaO 77 217 - -
Tpr4g1626 539 Pfam Rieske [2Fe-2S] domain 93 177 IPR017941 GO:0051537
Tpr4g1626 539 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 94 206 IPR017941 GO:0051537
Tpr4g1626 539 SUPERFAMILY ISP domain 87 212 IPR036922 GO:0051537
Tpr4g1626 539 MobiDBLite consensus disorder prediction 47 66 - -
Tpr4g1626 539 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 24 539 - -
Tpr4g1626 539 MobiDBLite consensus disorder prediction 47 84 - -
Tpr4g1626 539 Gene3D - 89 227 IPR036922 GO:0051537
Tpr4g1626 539 PANTHER PHEOPHORBIDE A OXYGENASE, CHLOROPLASTIC 24 539 - -
Tpr4g1626 539 SUPERFAMILY Bet v1-like 201 436 - -
Tpr4g1626 539 Gene3D - 231 437 - -
Tpr4g1626 539 Pfam Pheophorbide a oxygenase 302 397 IPR013626 GO:0010277
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1626 Tpr-Chr4 16617415 16621830 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1626 K13071 - gmx:100812162 929.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1626 4 16617415 16621830 Tpr4g1626 4 16617415 16621830 ECH