Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1618 ATGGCTCCGATTCCGTCTGAGAACGGCGTCGATGGAGACGATGAACGAGAAGAGGAAGAAGACGAAGAAGAAGAAGATGATGAAGAAGAAGTTGAAGATGACGAAGAAGAACCGAGACTCAAGTATCAGAGAATGGGAGGAAGCGTACCTTCGTTGTTAGCTACTGATGCGGCGTCGTGTGTGGCGGTTGCGGAGCGGATGATCGCTCTCGGTACTCAAGCTGGTACCATTCATATTCTTGATTTTCTCGGGAATCAGGTGAAAGAATTCTCTGCCCATGCATCTGTTGTGAATGACCTTAGTTTTGACTTAGAAGGGGAATATATTGGAAGCTGTTCTGATGACGGATCAGTTGTTATAAACAGCCTTTTTACTGATGAGGTAATGAAATTTGAGTACCATCGTCCAATGAAGGCGGTTGCTTTGGACCCTGATTATGCAAAGAAAATGTCCAGGAGGTTTATTGCTGGTGGTTTAGCTGGTAATTTATATTTAAATTCGAAGAAATGGTTGGGCTATCGGGACCAGGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAGTGGAGAGCAAGTCTTGTTGCCTGGGCCAATGATGCTGGAGTGAAGGTTTATGATACTGCCAATGACCGGCGAATAACATTTATCGAAAGACCACGAGGGTGTCCACACCCTGAGCTTTTGGTTCCTCACTTGGTTTGGCAGGATGACACCATCTTAGTTATGGGCTGGGGAACATCGGTCAAAATTGCCTCAATAAGGACAAATCACCATAAAGCCACCAATGGGGCATACATGCAAGTTCCTGTGCTTGGTATGACCCAGGTGGATATTGTGGCATCTTTTCAAACCAGCTATTTCATCTCAGGACTTGCCCCTTTTGGTGATTCTTTGGTTGTTCTTGCTTATATTCCTGGAGAAGAAGACGGAGATAAGGATTTTAGTAGCACAGCTCCTTCACGGCAGGGCAATGCACAAAGACCTGAAGTAAGAGTAGTTACATGGAATAATGATGAACTTTCAACAGATGCTCTACCAGTACATGGGTTTGAGCATTACAAGGCAAATGACTATTCTCTTTCTCATGCTCCCTTCTCAGGTAGCAGTTATGCTGGTGGTCAGTGGGCTGCAGGCGATGAACCACTGTACTATATTGTATCCCCAAAGGATGTAGTTATTGCAAAGCCAAGGGATACTGAAGACCATATTGCTTGGCTTCTTCAACATGGATGCCATGAAAAAGCTTTAGCTGTGGTTGAATCTGGTCAGGGACGCAGTGAACTACTTGATGAGGTGGGAACTAGGTACCTTGATCATCTGATTGTGGAAAGAAAATATGCTGAAGCAGCTTCTTTGTGTCCCAAGTTACTGCGAGGATCAGCTTCAGCATGGGAAAGATGGGTCTTCCACTTTGCACATCTGCGTCAACTCCCTGTTTTGGTTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTATGAGGTGGCTCTTGTTGCATTGGCTACAAATCCATCTTTCCATAAGGATCTCTTATCAGCTGTAAAATCCTGGCCGGCTGTAATATATTCTGCATTACCTGTTATTTCAGCCATTGAACCACAACTAAATACTTCGTCCATGACTGATTCACTCAAGGAGGCATTAGCAGAGTTGTATGTAATTGATGGGCAATATGACAAAGCATACTCATTGTATGCAGATCTTATGAAGCCAGAAGTATTTGATTTTATTGATAAACATAACCTACACGATGCAATTCAAGAAAAGGTTGTCCAACTGATGATGCTAGATTGCAAGCGTGCAGTTCCTCTGTTTATCCAGAATAGGGAATTAATAAGTCCAACGGAGGTTGTGAAGCAACTTCTAACTGCCAAGAACAAGTCTGATTGCAGATATTTTTTACATTTATATCTCCATTCACTGTTTGAAGTAAGTCCACACGCTGGGAAAGATTTCCATGATATGCAGGTAGAACTGTATGCGGACTATGATCCAAAGATGCTGCTACCTTTCCTTCGCAGCAGTCAACATTATACCCTTGAGAAGGCTTATGAAATTTGCATCAAAAGAGACTTAATGAGGGAGCAAGTCTTCATCTTAGGAAGGATGGGAAACGCCAAAAAAGCCCTAGCTGTTATTATAAACAAATTGGGGGATATAGAGGAGGCTGTAGAGTTTGTTACCATGCAGCATGATGATGAACTCTGGGAAGAATTAATCAAGCAATGCCTTCACAAACCTGAGATGGTGGGCATATTATTGGAGCACACGGTTGGAAATCTTGACCCCCTCTACATTGTAAATAAGGTTCCCAATGGGTTGGAAATACCTCGGCTCAGGGATCGTCTAGTTAAAATTATCACAGATTACAGGACAGAAACATCACTCAGACATGGGTGCAATGATATCCTTAAGACGGACTGTGTCAATCTTTTAGTTAAGTATCACAAAGAGGCAAGGCATGGAATTTCTTTAGGTAACGAAGAAGATGAGCCAAGAGTTAATATGAGTGATAACCGTGCCTCTCAGGCATTTGAGAAATCTCTAAGTCTGAGAACCATGGAGATGAAGTCAAAGACTAGGGGAGGAGGAAGATGTTGTATATGTTTTGATCCATTTTCTATACAGAATGTATCAGTCATTGTTTTCTTTTGCTGTCATGGTTATCACACAACTTGTCTCACGGATTCGTACTACACTACAAGTAGCACAAAAGAAAGTGAACCCACTTCCAAAGAGGCAGAAAGATATGATGATTACAATGGTTATGCGGATGATGCCAGCGATGAAAATGAAGAAGAAATCAAGTCGGACGGTCCTCGTATGCGTTGTATTTTGTGTACTACTGCTGCTGGTTGA 2871 0.427 MAPIPSENGVDGDDEREEEEDEEEEDDEEEVEDDEEEPRLKYQRMGGSVPSLLATDAASCVAVAERMIALGTQAGTIHILDFLGNQVKEFSAHASVVNDLSFDLEGEYIGSCSDDGSVVINSLFTDEVMKFEYHRPMKAVALDPDYAKKMSRRFIAGGLAGNLYLNSKKWLGYRDQVLHSGEGSIHAVKWRASLVAWANDAGVKVYDTANDRRITFIERPRGCPHPELLVPHLVWQDDTILVMGWGTSVKIASIRTNHHKATNGAYMQVPVLGMTQVDIVASFQTSYFISGLAPFGDSLVVLAYIPGEEDGDKDFSSTAPSRQGNAQRPEVRVVTWNNDELSTDALPVHGFEHYKANDYSLSHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDTEDHIAWLLQHGCHEKALAVVESGQGRSELLDEVGTRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKDLLSAVKSWPAVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVIDGQYDKAYSLYADLMKPEVFDFIDKHNLHDAIQEKVVQLMMLDCKRAVPLFIQNRELISPTEVVKQLLTAKNKSDCRYFLHLYLHSLFEVSPHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLMREQVFILGRMGNAKKALAVIINKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKTDCVNLLVKYHKEARHGISLGNEEDEPRVNMSDNRASQAFEKSLSLRTMEMKSKTRGGGRCCICFDPFSIQNVSVIVFFCCHGYHTTCLTDSYYTTSSTKESEPTSKEAERYDDYNGYADDASDENEEEIKSDGPRMRCILCTTAAG* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1618 956 SMART ring_2 870 951 IPR001841 -
Tpr4g1618 956 Coils Coil 17 37 - -
Tpr4g1618 956 MobiDBLite consensus disorder prediction 11 36 - -
Tpr4g1618 956 SUPERFAMILY WD40 repeat-like 55 264 IPR036322 GO:0005515
Tpr4g1618 956 SMART WD40_4 83 122 IPR001680 GO:0005515
Tpr4g1618 956 SMART WD40_4 171 207 IPR001680 GO:0005515
Tpr4g1618 956 Gene3D - 8 275 IPR015943 GO:0005515
Tpr4g1618 956 SMART CLH_2 609 756 IPR000547 GO:0006886|GO:0016192
Tpr4g1618 956 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 609 756 IPR000547 GO:0006886|GO:0016192
Tpr4g1618 956 MobiDBLite consensus disorder prediction 908 942 - -
Tpr4g1618 956 SUPERFAMILY RING/U-box 869 907 - -
Tpr4g1618 956 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG 1 956 - -
Tpr4g1618 956 Gene3D Tetratricopeptide repeat domain 549 818 IPR011990 GO:0005515
Tpr4g1618 956 MobiDBLite consensus disorder prediction 912 927 - -
Tpr4g1618 956 PIRSF Vps41 1 911 IPR016902 GO:0034058|GO:0046907
Tpr4g1618 956 MobiDBLite consensus disorder prediction 1 44 - -
Tpr4g1618 956 Pfam Region in Clathrin and VPS 611 752 IPR000547 GO:0006886|GO:0016192
Tpr4g1618 956 PANTHER VACUOLAR PROTEIN SORTING VPS41 1 956 IPR045111 GO:0006623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1618 K20184 - gmx:100804340 1704.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1618 4 16370343 16379588 Tpr4g1618 4 16370343 16379588 ECH