Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1588 ATGGTTTTAGTAACAACAACAATAACACTTTCTTGTTCCTCTTTACTACATTATTATTCTACAACCAGAACCAGATACGTGGTCGTTCGATGCACTCGTAGCAGCAGCAACGTTGTTCAAGAGATAGATGAGAAATCAGAGAATGTGTTTCATCCATTGAAAGTAGCAAAGAGAGTGGTGCTTGTTAGACATGGACAAAGTACATGGAATGCTGAAGGAAGGATTCAAGGTAGTTCTGATTTCTCTGTTCTTACTAAGAAAGGTGAGTCTCAGGCTGAGACTTCACGTCAAATGCTCTTTGATGATAACTTCGACGCTTGTTTCTCCAGTCCTTTGGCACGATCAAAGAGAACTGCTGAAATCATTTGGGGAGCTCGCCAAGAACAAATTATTCCTGAGTTTGACCTACGGGAAATTGATTTGTACTCCTTTCAAGGTTTGTTGAAGGAAGAGGGAAAAAGGAGATTTGGTCCGGCCTTTCATCAATGGCAGGTAGATGCTTCAAATTTCATCATTGACGGTCATTATCCTGTAAGAGAGCTATGGGATCGTGCTAGGAACTGCTGGACTAAAATCCTAGCTCATGATAGCAGGTCTGTTCTTGTGGTTGCCCACAATGCTGTTAATCAGGCTCTTGTTGCAACAGCAATTGGTTTGGAATACGAATACTTCAGAACTTTACTTCAGAGCAATTGTGGTGTAAGTGTGTTGGATTTCACCCCAAGACCGGACGGTGGTTCTCCCCATATCTGTCTTAACCGCTTAAACCAGACACCTGGTTCACCTGTTGCCGGAGGGAAATCTGGAGGTAGAGAGGCAAGTAAGCGGATTGTTCTTGTTTGTAACGGATCTACTCAAGGAAATACAGAGGGTGGTTTTCTTTTTGCCGGTGATCAACCATTGAACATGCTTGGTGTTATACAGTCTCAGAAATCTGCAGAACTACTTCTTGATTTGTCTGTGAGTTCCATAATTAGCAGTCCTAGCAAATCTTGTATCGAGACAGCCACGGCCATATCCCAGGTACAAGAGGCTGCAGATTGCTTGGGTGCTGACTGCGTGCCACGCTACGTTGAGACAAAGGAAATGGGGTACCTTGATATTGAAGATATCTTTAAACAATCCAAAATGGATGTATCCAGTTTACCGCCATTTCAGCCTGGATGGTTAAATAAAGTTGACGATGAATTGCGAACAACATTATGGGATCAGTCTGGAAATGCCTGGAAATCCCTGTTGGACGAAATATCCGATGAATCTAAATCAGGAGAAGTTATAGTTGCAGTTTCTCATCCTGCGATTCACATAGGACTACTGGCGCACTGCCTTAATTTAACGAAAGAATGGATGGGATCATTTCATCTTGATGCAGGAAGCATTAGCGTCCTTGACTTCCCCGATGGACCTAAGGGAAACGGCGTAATCAGGTGCATAAATTATACCGCACACTTAGGGAGATGGTCCATCCCTATTACAAGACCAACAGCAGAGGATGTTGAAGATTTTTAA 1509 0.4294 MVLVTTTITLSCSSLLHYYSTTRTRYVVVRCTRSSSNVVQEIDEKSENVFHPLKVAKRVVLVRHGQSTWNAEGRIQGSSDFSVLTKKGESQAETSRQMLFDDNFDACFSSPLARSKRTAEIIWGARQEQIIPEFDLREIDLYSFQGLLKEEGKRRFGPAFHQWQVDASNFIIDGHYPVRELWDRARNCWTKILAHDSRSVLVVAHNAVNQALVATAIGLEYEYFRTLLQSNCGVSVLDFTPRPDGGSPHICLNRLNQTPGSPVAGGKSGGREASKRIVLVCNGSTQGNTEGGFLFAGDQPLNMLGVIQSQKSAELLLDLSVSSIISSPSKSCIETATAISQVQEAADCLGADCVPRYVETKEMGYLDIEDIFKQSKMDVSSLPPFQPGWLNKVDDELRTTLWDQSGNAWKSLLDEISDESKSGEVIVAVSHPAIHIGLLAHCLNLTKEWMGSFHLDAGSISVLDFPDGPKGNGVIRCINYTAHLGRWSIPITRPTAEDVEDF* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1588 502 Gene3D - 57 259 IPR029033 -
Tpr4g1588 502 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 61 70 IPR001345 GO:0003824
Tpr4g1588 502 SUPERFAMILY Phosphoglycerate mutase-like 57 252 IPR029033 -
Tpr4g1588 502 CDD HP_PGM_like 58 245 IPR013078 -
Tpr4g1588 502 SUPERFAMILY Phosphoglycerate mutase-like 275 489 IPR029033 -
Tpr4g1588 502 PANTHER 2-CARBOXY-D-ARABINITOL-1-PHOSPHATASE-RELATED 32 242 - -
Tpr4g1588 502 PANTHER 2-CARBOXY-D-ARABINITOL-1-PHOSPHATASE-RELATED 419 498 - -
Tpr4g1588 502 PANTHER 2-CARBOXY-D-ARABINITOL-1-PHOSPHATASE-RELATED 272 344 - -
Tpr4g1588 502 Pfam Histidine phosphatase superfamily (branch 1) 59 241 IPR013078 -
Tpr4g1588 502 Pfam Histidine phosphatase superfamily (branch 1) 277 468 IPR013078 -
Tpr4g1588 502 SMART PGAM_5 276 438 IPR013078 -
Tpr4g1588 502 SMART PGAM_5 58 212 IPR013078 -
Tpr4g1588 502 Gene3D - 269 488 IPR029033 -
Tpr4g1588 502 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 32 242 - -
Tpr4g1588 502 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 419 498 - -
Tpr4g1588 502 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 272 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1588 Tpr-Chr4 15872457 15878573 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1588 K22200 - gmx:100794084 766.533