Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1520 ATGAAGGTTGAAGCTAGGTCTCATCATCATGTTCATGGACATGGGGAAGAAGAGAAGGTGATGACAAGGAAGCAGAAGGCAGAATCTAAAGCACAAGAAGTAGAGCATACTCCTAAAAAAGCTAAGGTGGAAAATGAAGGTGGTCACACTAATGGAAAATCTGCTTCAAATGTTTTAGAAGAATATGATGAGTTTTGTAAAGCCACAAATGATAAACTATCTTTGGAGCAAATGAAAGAGATTCTTGAAGCTAATGGTCTTGATTCCTCTGGTTCTGATCTTGAAATTACTAGAAGATGCCAAGATTTGCTGTTTTTTGGTGCATTAGAGAAATGCACGGTTTGCAATGGCAATTTGGAGTTTGATGGAAGACGTTATGCTTGTAGAGGCTTCTACAGTGAGTGGTCTAGTTGCACTTTCAGCACAAGGGACCCTCCAAGGAAAGAGGAACCTATAAAACTACCAGATTCTGTTCAGAACTCTCCAGTTTCAGATTTGCTGAAGAAATATCAGGACCAGAGTAAAAGGCCTCAAAGGGATTTAGGCTTAGCTATAAAGCCTTTTACTGGAATGATGATTTCTCTGATGGGTCGTCTTAATCGAACACATGGATATTGGAAAACTACTATTGAAAAGCATGGAGGGAGAGTAGTAAACTCTATTATTGGTGCAACTTGTTTGGTGGCTTCACCTGCTGAACGAGAACGTGGTGGAACATCTAAACTTGCAGAAGCCATGGAGAGGAGTATACCTGTGGTTAGGGAGGCTTGGTTAACTGACAGCATTGAAAAGCAAGAACCACAACCTTTAGAAGCTTATGATCTTGCATCTGATCTTTCTGTGGCTGGAAAGGGAATCCCTTGGGACAAACAAGATCCTGGGGAGGAGGCTATTGAATCACTCTCAGCAGAACTCAAGCTTTATGGAAAGAGAGGAGTCTACAAAGATACCAAATTGCAGGAGCAAGATGGAAAGATATTTGAAAAAGATGGGATACTATACAACTGTGCCTTCTCTGTTTGTGACCAAGGGAGAAAACTTAATGACTACTGTGTCATGCAACTGATTATTGTCCCTGAGAATCGTTTGCATCTGTATTTCAAGAAGGGAAGAGTGGGGGACGATCCAAATGCAGAGGAGCGATTAGAAGAGTGTGAGAATGTTGACAATGCTATCAAAGAGTTTGTGAGGCTCTTTGAGGAAATAACAGGAAATGAGTTTGAATCATGGGAAAAAGAGAAGAAGTTTGAGAAGAAGCCATTGAAGTTTTACCCCATTGACATGGATGATGGAGTTGAAGTTAGACATGGGGCACTAGGTCTTCGGCAGCTTGGTATAGCAGCCACACACTGTAAACTTGAGCCTGTGGTTGCAAATTTTATGAAGGTTTTGTGCAGCCAGGAGATTTATAAGTACGCATTAATGGAGATGGGTTATGACTCTCCAGACCTTCCAATAGGAATGGTTACAAATCTTCACCTGAAAAGATGTGAGGAAGTTCTGATGGAATTCATTGAGAAAGTGAAATCATTGAAAGAGACAGGACCCAAGGCTGATGCTATTTGGTCTGATTTTAGCCAGAGATGGTTCACTCTGATGCACTCCACAAGGCCTTTCATTTTTAGAGATCACCAGGAGATTGCAGAACATGCTGCTGCAGCCCTGGAGGGTGTTAGAGATATAACCCTTGCTTCTCACCTCATAGGAGATATGAGTGGTTCTACTATTGATGATCCAATATCAGACACTTACAAGAAATTAGGTTGCTCAATTTCTCCCCTGGAGAAAAATTCAGATGATTACAATATGATTGTGAAATACCTTGAAAAAACATATGAACCTGTCAAAGTTGGTGACATTGAGTATGGGGTGTCAGTTGAAAACATCTTTGCTGTGGAACCAAGTGCTTGTCCTTCTTATGAAGAAATAGTTAAGCTGCCAAATAAGGTTCTTCTATGGTGTGGATCACGAAGCTCAAATCTTTTGAGGCACTTGCACAAGGGGTTCTTGCCAGCTATATGTTCACTACCCGTTCCTGGTTACATGTTTGGCAAAGCCATTGTTTGCTCTGATGCTGCAGCAGAGGCTGCAAGATATGGTTTTACTGCTGTAGATAGGCCAGAAGGGTTCTTGGTTTTGGCCATTGCTTCACTAGGAAATGAGATTACAGAGTTGAAAAGCCCACCTGAGGACACAACATCTTTGGAGGAAAAGAAGATTGGAGTGAAGGGGCTTGGAAAGAAGAAAACAGATGAATCAGAGCATTTTGTTTGGAAAGATGACATAAAAGTTCCATGTGGTAGAATAATTGCCTCGGAGCATGAAGATAGCCCTCTGGAATACAATGAGTATGCTGTCTATGATCCTAAGCAGGTACGCATAAGCTACTTGGTGGGGGTGAAGTATGAAGAGAAGGATGCCGTGATAGACACGGCAGAGTGA 2442 0.4165 MKVEARSHHHVHGHGEEEKVMTRKQKAESKAQEVEHTPKKAKVENEGGHTNGKSASNVLEEYDEFCKATNDKLSLEQMKEILEANGLDSSGSDLEITRRCQDLLFFGALEKCTVCNGNLEFDGRRYACRGFYSEWSSCTFSTRDPPRKEEPIKLPDSVQNSPVSDLLKKYQDQSKRPQRDLGLAIKPFTGMMISLMGRLNRTHGYWKTTIEKHGGRVVNSIIGATCLVASPAERERGGTSKLAEAMERSIPVVREAWLTDSIEKQEPQPLEAYDLASDLSVAGKGIPWDKQDPGEEAIESLSAELKLYGKRGVYKDTKLQEQDGKIFEKDGILYNCAFSVCDQGRKLNDYCVMQLIIVPENRLHLYFKKGRVGDDPNAEERLEECENVDNAIKEFVRLFEEITGNEFESWEKEKKFEKKPLKFYPIDMDDGVEVRHGALGLRQLGIAATHCKLEPVVANFMKVLCSQEIYKYALMEMGYDSPDLPIGMVTNLHLKRCEEVLMEFIEKVKSLKETGPKADAIWSDFSQRWFTLMHSTRPFIFRDHQEIAEHAAAALEGVRDITLASHLIGDMSGSTIDDPISDTYKKLGCSISPLEKNSDDYNMIVKYLEKTYEPVKVGDIEYGVSVENIFAVEPSACPSYEEIVKLPNKVLLWCGSRSSNLLRHLHKGFLPAICSLPVPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASLGNEITELKSPPEDTTSLEEKKIGVKGLGKKKTDESEHFVWKDDIKVPCGRIIASEHEDSPLEYNEYAVYDPKQVRISYLVGVKYEEKDAVIDTAE* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1520 813 MobiDBLite consensus disorder prediction 1 47 - -
Tpr4g1520 813 Pfam Poly(ADP-ribose) polymerase, regulatory domain 451 584 IPR004102 GO:0003950
Tpr4g1520 813 ProSiteProfiles BRCT domain profile. 183 275 IPR001357 -
Tpr4g1520 813 Gene3D - 588 804 - -
Tpr4g1520 813 CDD WGR_PARP1_like 324 430 - -
Tpr4g1520 813 SMART WGR_cls 334 417 IPR008893 -
Tpr4g1520 813 PANTHER DNA LIGASE 3 805 - -
Tpr4g1520 813 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 450 586 IPR036616 GO:0003950
Tpr4g1520 813 Gene3D - 22 107 - -
Tpr4g1520 813 Gene3D - 108 171 IPR038650 -
Tpr4g1520 813 ProSiteProfiles PARP alpha-helical domain profile. 450 569 IPR004102 GO:0003950
Tpr4g1520 813 CDD parp_like 450 801 - -
Tpr4g1520 813 SUPERFAMILY BRCT domain 185 287 IPR036420 -
Tpr4g1520 813 SUPERFAMILY WGR domain-like 299 428 IPR036930 -
Tpr4g1520 813 SMART BRCT_7 185 265 IPR001357 -
Tpr4g1520 813 SMART PADR1_2 96 149 IPR012982 -
Tpr4g1520 813 Pfam BRCA1 C Terminus (BRCT) domain 186 262 IPR001357 -
Tpr4g1520 813 Pfam WGR domain 334 413 IPR008893 -
Tpr4g1520 813 Gene3D - 446 587 IPR036616 GO:0003950
Tpr4g1520 813 Gene3D BRCT domain 183 280 IPR036420 -
Tpr4g1520 813 CDD BRCT_PARP1 188 263 - -
Tpr4g1520 813 PANTHER POLY [ADP-RIBOSE] POLYMERASE 3 805 - -
Tpr4g1520 813 SUPERFAMILY ADP-ribosylation 587 805 - -
Tpr4g1520 813 Pfam Poly(ADP-ribose) polymerase catalytic domain 598 801 IPR012317 GO:0003950
Tpr4g1520 813 ProSiteProfiles WGR domain profile. 323 423 IPR008893 -
Tpr4g1520 813 ProSiteProfiles PARP catalytic domain profile. 578 809 IPR012317 GO:0003950
Tpr4g1520 813 Coils Coil 494 514 - -
Tpr4g1520 813 MobiDBLite consensus disorder prediction 1 53 - -
Tpr4g1520 813 Pfam PADR1 (NUC008) domain 98 148 IPR012982 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1520 Tpr-Chr4 14955736 14960134 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1520 K10798 - gmx:548024 1436.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1520 4 14955736 14960134 Tpr4g1520 4 14955736 14960134 ECH