Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1497 ATGGCTATGGCGCCAAGAAAACCTCGCAACCGTGAAATTCTCTTCGACTCCGTCATCGCTCTTGTTTTCATCCTCGTCGCTTGTGTCGACCTCTGCGACGGCGCTACCGTTGTTGATGTTTACCGATTAATTCAATACGATATGTCTGGTGTTCCTTTTGGATCTCGACTTGCTAGTCTTAATCATCATGCTGCTTCTCTTCATTTCTCTCCTCATGCTGATCTATCTCGCACTGTTCTTCTCATTCCTCTTCGTGAACTCAATATGTCGTTTGTTCAAGAGTATATTGTTGCTAGCAAGCCTCTGGGGGGTTTAATATTTTTGCTGCCCCAGATGTTTAATTCCGAAAACAAAGGTGGCGTGGGAAGTAATCGTGATGATGGGAACAAAGATCTGCTGAAGAATGTGCTGGCCGAGCTTGAACAAATACTTATACACACAAACTTACCTTATCCTGTTTATTTTGCTTTTGAGGATGACAACATTGACAATGTGTTATTGGATATCAAGAAGAATGATGCCTCTGGTCAGCCTGCTACTGCAACTACGGGCGGGTACAAATTTGTTGTTTCAGCCACTGAACCAAAGAAAGTTGGATCTCCACCCATTACAAATATTCAGGGATGGTTGGCAGGGCTGAAGACCGATGGCGATTCTCATCAATTACCCACCATTGCGATAGTGGCATCATATGACACCTTTGGGGCTGCTCCGGCATTATCAGTGGGAAGCGATAGCAATGGAAGTGGCATTGTGGCTCTTCTTGAAGTAGCTAGATTATTTTCTCTTTTATATTCTAATCCAAAGACAAGAGGACAATACAATCTTCTGTTTGGGCTAACGTCTGGCGGGCCTTACAACTACAATGGAACCCGTAAGTGGCTTCAGAGCTTTGATCAACGTCTGCGTGAGAGCATTGACTATGCTATTTGCTTAGATAGTATTGGCTCATGGGAAAATGATCTGTGGATTCATGTGTCTAAGCCTCCAGAAAATGCCTTTATTAAACAAATTATGGAAGATTTTTCAAGCGTTGCAGAAGATTTAGGTTTCCAAGTTAATCTGAAGCATAAGAAAATAAATATTTCAAATTCTCGAGTAGCTTGGGAGCATGAACAGTTTTCAAGGCTGAGAGTTACTGCTGCCACCCTCTCTGAACTCTCTACAGCACCTGAATTGCTAGAAAGCACCGGTGGTTTGATTGATGGCAGGCAATTTGTCAATGAAGCGTCAATTGTGAGAAGTGTGAAATTAATTGCTGAGTCTCTTGCGAAGCATATTTATGGGCATCAAGGAAAGAACGTACAGATCTTTGCTGACAACAGTAACTTGGCTGTAAATCCTTCTTATGTTCGATCATGGTTAGATATTTTGTCGCGAACACCTCGAGTAGCACCATTTTTATCAAAAGACGATCCTTTTATTACAGCATTGAAAAAGGAATTAGAAGATCATACTGATGAAGTCCATCTGCAACGAGAAGTACTAGATGGGATGTTCACTTTCTATGATTCAACTACAGCAAAGCTAAACATATATCAGGTTGCCAGTGTCACGTTTGACTTGCTGTTGCTTCTAGTGTTGGGATCATATTTAATTGTGCTCTTCAGTTTCTTGGTCATCACTACTAGGGGTCTTGATGATCTAATCAGTTTATTTCGGCGGCCTCCTTCACGAAAAGTGAAGACTGCATAA 1695 0.4183 MAMAPRKPRNREILFDSVIALVFILVACVDLCDGATVVDVYRLIQYDMSGVPFGSRLASLNHHAASLHFSPHADLSRTVLLIPLRELNMSFVQEYIVASKPLGGLIFLLPQMFNSENKGGVGSNRDDGNKDLLKNVLAELEQILIHTNLPYPVYFAFEDDNIDNVLLDIKKNDASGQPATATTGGYKFVVSATEPKKVGSPPITNIQGWLAGLKTDGDSHQLPTIAIVASYDTFGAAPALSVGSDSNGSGIVALLEVARLFSLLYSNPKTRGQYNLLFGLTSGGPYNYNGTRKWLQSFDQRLRESIDYAICLDSIGSWENDLWIHVSKPPENAFIKQIMEDFSSVAEDLGFQVNLKHKKINISNSRVAWEHEQFSRLRVTAATLSELSTAPELLESTGGLIDGRQFVNEASIVRSVKLIAESLAKHIYGHQGKNVQIFADNSNLAVNPSYVRSWLDILSRTPRVAPFLSKDDPFITALKKELEDHTDEVHLQREVLDGMFTFYDSTTAKLNIYQVASVTFDLLLLLVLGSYLIVLFSFLVITTRGLDDLISLFRRPPSRKVKTA* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1497 564 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Tpr4g1497 564 PIRSF Nicalin 4 559 IPR016574 GO:0009966|GO:0016020
Tpr4g1497 564 ProSitePatterns EF-hand calcium-binding domain. 245 257 IPR018247 -
Tpr4g1497 564 CDD M28_nicalin_like 137 430 - -
Tpr4g1497 564 PANTHER NICALIN 11 563 IPR016574 GO:0009966|GO:0016020
Tpr4g1497 564 SUPERFAMILY Zn-dependent exopeptidases 149 408 - -
Tpr4g1497 564 Pfam Nicastrin 225 361 - -
Tpr4g1497 564 PANTHER NICALIN 11 563 - -
Tpr4g1497 564 Gene3D Zn peptidases 134 398 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1497 7 562 EF-hand Containing Proteins AT3G44330 74.643 0.0 853
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1497 - - mtr:MTR_4g052530 1036.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1497 4 14753469 14763351 Tpr4g1497 4 14753469 14763351 ECH