Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1490 ATGGCAACCGTTCCTTTGGTATCTGCTGTCCTAAGAAGGCTAGAGGGGAAGGTAGCTCTGATCACCGGTGGTGCAAGTGGCATCGGCGAGGCCACCGCAAGACTCTTCTCCAAGCACGGAGCTAAAGTGGTAATAGCTGATATTCAAGATGACATAGGTCATTCTATTTGCAATGATTTACTCGAATCGCCTGCCTCCTATGTCCATTGCGACGTGACAAAGGAAAAAGACGTTGAAAACGCCGTGAATACAACAATTTCCAAGTATGGTAAACTAGATATCATGGTTAACAATGCTGGTATAGCCGGTGCAAACAAAACCAACATACTTGATTACAAGTTATCTGAATTTGAGGAAGTGATTAATGTTAACTTGGTTGGTGTCTTTCTCGGAACAAAACATGCCTCAAGGGTAATGATCCCCGCTCGACGAGGTAGCATAATTAACACAGCTAGTGTTGGTGGAAGTATAGGCGGTGCTGCTTCACATGCCTACACTAGTTCAAAACACGGCGTTGTGGGGCTAATGAAAAACACGGCCATCGAGCTTGGACCGTATGGTATTCGGGTGAATTCCGTATCACCTTATATCGTTGCAACGCCGATGGTTAAAAAGTACTTAAAGTTAGATATTGATGATGATGGGGTTTTACCATTTTATTCTAACCTAAAGGGTACTAATCTTGTGCCAAACGATGTGGCTGAAGCTGCTCTATACTTGGGAAGTGATGAATCTAAGTATGTTAGTGGTCACAATCTTGTTGTAGATGGAGGGTTCACAGCTGTAAACACCGGATTTTGTGTGTTTGGACAATCTGCTTAA 822 0.4343 MATVPLVSAVLRRLEGKVALITGGASGIGEATARLFSKHGAKVVIADIQDDIGHSICNDLLESPASYVHCDVTKEKDVENAVNTTISKYGKLDIMVNNAGIAGANKTNILDYKLSEFEEVINVNLVGVFLGTKHASRVMIPARRGSIINTASVGGSIGGAASHAYTSSKHGVVGLMKNTAIELGPYGIRVNSVSPYIVATPMVKKYLKLDIDDDGVLPFYSNLKGTNLVPNDVAEAALYLGSDESKYVSGHNLVVDGGFTAVNTGFCVFGQSA* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1490 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 IPR002347 -
Tpr4g1490 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 IPR002347 -
Tpr4g1490 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 IPR002347 -
Tpr4g1490 273 Pfam Enoyl-(Acyl carrier protein) reductase 23 260 - -
Tpr4g1490 273 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 152 180 IPR020904 GO:0016491
Tpr4g1490 273 Gene3D - 7 270 - -
Tpr4g1490 273 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Tpr4g1490 273 PRINTS Glucose/ribitol dehydrogenase family signature 90 101 IPR002347 -
Tpr4g1490 273 PRINTS Glucose/ribitol dehydrogenase family signature 139 155 IPR002347 -
Tpr4g1490 273 PRINTS Glucose/ribitol dehydrogenase family signature 165 184 IPR002347 -
Tpr4g1490 273 PRINTS Glucose/ribitol dehydrogenase family signature 186 203 IPR002347 -
Tpr4g1490 273 PRINTS Glucose/ribitol dehydrogenase family signature 223 243 IPR002347 -
Tpr4g1490 273 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 7 266 - -
Tpr4g1490 273 CDD secoisolariciresinol-DH_like_SDR_c 13 260 IPR045309 GO:0016616
Tpr4g1490 273 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 262 IPR036291 -
Tpr4g1490 273 PANTHER MOMILACTONE A SYNTHASE 7 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1490 Tpr-Chr4 14679935 14682632 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1490 14 260 Acyl Lipid Metabolism Gene Families AT1G63380 34.866 2.93e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1490 - - gmx:100782627 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1490 4 14679935 14682632 Tpr4g1490 4 14679935 14682632 ECH