Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1478 ATGGGTGTGCCATCGTTTTATAGATGGTTAATCAACAAATATCCAAAAGCGGTTACTAACACAAACACTTCAACTGTTGAATATGATAATCTTTATCTTGACATGAATTCCATTATCCATCCATGTTTTCATCCCAATGATGATGATAACAACATCAACAAGATTTCTCCAACAACATTTGATCAAGTGTTTACAAATATGTTTGATTACATTGATCACCTTGTTACCATTGTTAAGCCTCGCAAGCTACTCTACATGGCCATTGACGGAGTAGCTCCACAAGGGAAAATGTATAATCAAAGGACTAGACGTTTTAGAACGGCTAAAGATGATGAAATGCGTGAAGCCGAGGAAGAGAGACTAAGGAAGAAATTTGAAATGGAAGGAAAACAAGTTCTTCCTAAACAAGAATGTGAAGTGTCAGATTCTAATATAATAACACCAGGAACAGAGTTCATGCACCAACTCTCAAAGGCTCTTAAAAGTTATATCTCTTTAAGAATATCCTCTAATTCCTTATGGAAAGATATTATGGTAATTTTATCTGATGCTAATGTTCCTGGGGAAGGAGAACATAAGATTATCTCATTCATAAGGAAACAACGGGGTCTTCCTGATTACGATCCAAACACCGTTCACTGCCTATATGGCTCGGATGCTGATCTTATAATGCTTGGACTGTCAAGCCACGAGCCTCATTTTTCGATCATAAGAGAGGTTGTGCCTAATTATCATGAGAAGCTGCAACAGAATGCTGTTAAGCGGTTCGAGCTTTTGCATATTTGGTTGTTGAGAGAATATCTTGAATTAGAAATGAAGATACAAGATCCTCCGAAAAATTTCACCGTTGATTTTGAGCGAATAGTTGATGATTTTATCTTCATTTGTTTCTTTGCTGGAAATGATTTTCTTCCTCACTTGCCATCTTTGGATAATATTTTTGAGGGGGCTATTGATTTACTTATGACTGTTTACAAGAAAGAGTTCAATAAATTTGGAGGATATCTTGTGGACATTAATAAGATGGGGGAGAAATGCATGACATTTGTGAAGCTATCACGAGTTGAAAAATTCATACTTATGGTTGGTGCATATGAAGAAAAAATCTTCAATAAAAAAAGTGCAATTAGAGACAACAAATTGAGAAGGCTTATTAGTGATCAAGAGCAATCCAAGCAAGAAGAACAGAATGCATTTGATTATATGGATATTGAAAATGAAAGTAGTTCAAATTGCACGGTTTCTGATGAGGAAATTTTGAAAAACACAAAGGACTTGAAAGAGGAATTAAACAAATGCATAAAAGAGAAAGGGGACTTATTGAAGAGTGGAGATTTCTTGATTGACAAGATAAAATTGGGAACTGTTGGGTTTAAAGAGAGATATTACAAAGAGAAGTTTTCTGTGGAGGGCTCTACCAACATTGAGCTAAAAAGGAAAGAAATAGTGCAGAAGTACACTGAGGGTTTGTTGTGGGTTCTTCAATATTATTTTTCAGGAGTTGCTTCGTGGACATGGTTTTATCCCTATCATTATGGTCCATTTGCTTCAGACTTAAAAGGCATGGGTCAAGTGAGAGTATGTTTTGAGAAAGGTGTTCCATTCTTACCTTTTGATCAACTCTTAAGTGTTCTCCCTCAAAGGAGTTCTTATGCACTTCCAAAAGCATATGCACATCTGATGCTGGATGAGCAGTCAAAAATATTTGACTTGTTTCCTCAGAATTTTGAAATTGACATAGAAGGAAAGCGCTTCATGTGGCAGGGTATATGCAAACTTCCATATATGGATGAAAAAAGGCTTTTGGCTGAAACCAGAGAACTCATGAATGGATTAACTGAAACTGAAGCAAAAAGAAATTCGGTTGAAGTAGATAGGCTGTTGGTTAGTAACACTGCCAAGGTAGCAGAAAAAATTTGCTCACTAAGTTCAAACAAATTAGACACAAGCATAAGCAGCGATGGCATTGGCGGAATCATAAGTCTTTGCCACGAGGGCGTTGAGGAAAACCAACAAGATTCAGTCTTTTGTGTCAAATATGAGATGCCGGTGAATGGTTCAAGTCATATTCAGCATCTACTATATGGCGTAAATTTTCCCGAAAAGACGATCTTTGAAAATGATATAAAGGAGACGGTTCTCTGGCATGAACTTCAACAATTTCATAACCGTTTTGAGCGGTCGAATAATCAAGACAATTGGAGAAGTTCAAATAGGGAGGGCAATAATTCAAAGTTTCCTCCTACTGCATCTGCTTTTGGTGGAAGAATCTATGGACCTTCTGAATCGATTCACGAAGGTGCTGGCGTTGGATGGGGTTCGGGTAGAGGCAAACCAGAAAGGATCGATCATGACATTCTTAATGAAAGAATGTCGACATTTACTCCTTTTCGTAAACAACCTAATGGTTACGGAGGATCTTCTTATCAACAACGTTCGAATGCGCCTTTTAGTAGAGGACAAGGCAGGGTTCAACAGAATCCGAACAATGTGTATTCATGGAAGGGTGTTTCTTCTAATTCAAACAACTCGGCACAGCCTCAATGGAATGAATCAAAGGACAAAAGCCGCTGGTAG 2577 0.3752 MGVPSFYRWLINKYPKAVTNTNTSTVEYDNLYLDMNSIIHPCFHPNDDDNNINKISPTTFDQVFTNMFDYIDHLVTIVKPRKLLYMAIDGVAPQGKMYNQRTRRFRTAKDDEMREAEEERLRKKFEMEGKQVLPKQECEVSDSNIITPGTEFMHQLSKALKSYISLRISSNSLWKDIMVILSDANVPGEGEHKIISFIRKQRGLPDYDPNTVHCLYGSDADLIMLGLSSHEPHFSIIREVVPNYHEKLQQNAVKRFELLHIWLLREYLELEMKIQDPPKNFTVDFERIVDDFIFICFFAGNDFLPHLPSLDNIFEGAIDLLMTVYKKEFNKFGGYLVDINKMGEKCMTFVKLSRVEKFILMVGAYEEKIFNKKSAIRDNKLRRLISDQEQSKQEEQNAFDYMDIENESSSNCTVSDEEILKNTKDLKEELNKCIKEKGDLLKSGDFLIDKIKLGTVGFKERYYKEKFSVEGSTNIELKRKEIVQKYTEGLLWVLQYYFSGVASWTWFYPYHYGPFASDLKGMGQVRVCFEKGVPFLPFDQLLSVLPQRSSYALPKAYAHLMLDEQSKIFDLFPQNFEIDIEGKRFMWQGICKLPYMDEKRLLAETRELMNGLTETEAKRNSVEVDRLLVSNTAKVAEKICSLSSNKLDTSISSDGIGGIISLCHEGVEENQQDSVFCVKYEMPVNGSSHIQHLLYGVNFPEKTIFENDIKETVLWHELQQFHNRFERSNNQDNWRSSNREGNNSKFPPTASAFGGRIYGPSESIHEGAGVGWGSGRGKPERIDHDILNERMSTFTPFRKQPNGYGGSSYQQRSNAPFSRGQGRVQQNPNNVYSWKGVSSNSNNSAQPQWNESKDKSRW* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1478 858 CDD PIN_XRN1-2-like 31 268 - -
Tpr4g1478 858 Gene3D - 132 303 - -
Tpr4g1478 858 MobiDBLite consensus disorder prediction 791 858 - -
Tpr4g1478 858 PIRSF Exonuclease_Xrn2 242 415 IPR017151 GO:0004534|GO:0005634|GO:0006139
Tpr4g1478 858 PIRSF Exonuclease_Xrn2 376 857 IPR017151 GO:0004534|GO:0005634|GO:0006139
Tpr4g1478 858 PIRSF Exonuclease_Xrn2 1 249 IPR017151 GO:0004534|GO:0005634|GO:0006139
Tpr4g1478 858 MobiDBLite consensus disorder prediction 729 749 - -
Tpr4g1478 858 Pfam XRN 5'-3' exonuclease N-terminus 1 239 IPR004859 GO:0003676|GO:0004527
Tpr4g1478 858 MobiDBLite consensus disorder prediction 793 851 - -
Tpr4g1478 858 PANTHER 5'->3' EXORIBONUCLEASE 1 747 IPR027073 -
Tpr4g1478 858 Pfam Xrn1 helical domain 283 709 IPR041412 -
Tpr4g1478 858 Gene3D - 524 622 - -
Tpr4g1478 858 PANTHER OS11G0157000 PROTEIN 1 747 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1478 Tpr-Chr4 14545370 14551409 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1478 - - cam:101491694 1284.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1478 4 14545370 14551409 Tpr4g1478 4 14545370 14551409 ECH