Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1419 ATGGTCATATACCTCTCTCCTTCTCCACCTTCACATTCAACTTCCATAATCAGATTATCCAATTCAAAGAGACCCATTTCAGACTCTTCAATAAAGCTCAAAACCCATTTCTCAAAATCACTTCTTTCTCCTTCATTCACTTCCTCAAACGTGAAATTCACCACCAAGAAACACTTTTTACATGATAACAAAAAAAGGGTTGATTTTAGAACATGTGCTATTGGTGGATTTGATTATGGTAGCTTTGAAGGTCCTCAGTCTGTTCTTGAAGCTGCTGCTGTGTTAACAGCTATCATTGTTGTTCATGAAAGTGGTCATTTTCTTGCTGCTTCTCTTCAAGGGATTCATGTGAGTAAATTTGCTGTTGGATTTGGTCCAATTTTAGCTAAGTTTAATTCAAAAAATGTTGAATATTCAATTAGAGCTTTTCCACTTGGTGGATTTGTAGGGTTCCCTGATAATGATCCAGATAGTGATATTCCTGTTGATGATGTAAATTTGCTTAAGAATAGACCAATATTAGATAGAATCATTGTTGTTTCAGCTGGTGTTATTGCAAATGTAATTTTTGCATTAGTTATTATATTTGTTCAAATCCTTGCTGTTGGTTTACCTGTTCAAGAAATTTTTCCTGGTGTGAATGTACCCGAGGTTCGACCTTTTTCGGCCGCTTCTCGTGATGGATTGCTTTCGGGGGATGTGATTCTTGAAGTTAATGGAAATCAGTTTCTTAAACCTGGTCCGAATTCGGTTTCTGAAGTTGTTGATGTCATTAAGAGTAATCCCAAGAAATATGTTTTGCTTAAGGTTAAGAGAGGGGGAGAGGACTTTGAAATTAGGGTTACCCCGGATGAGAATTTCGATGGAACTGGTAAAATTGGAGTTCAGTTAGCTCCGAATATTAAGTTGTCTAAGGTTAGGCCGAAAAATGTAGTGGAAGCTGTGACCTTTACTGCAAAAGAGTTTTGGGGTTTATCGTCGAATGTTTTCGATGGGTTAAAGCAGACATTTTTAAACTTTTCTCAGTCAGCTAGTAAGGTTTCAGGTCCGGTTGCGATTATTGCTGTTGGTGCAGAAGTTGCGCGGTCAAACATCGATGGTCTTTACCAATTCGCAGCCATACTCAATATTAACCTTGCAATTATAAACCTTCTTCCTTTACCGGCTTTGGATGGGGGAACATTGGCTTTGATTCTCGTTGAGGCTGCTAGGGGCGGAAGAAAGCTACCTCTTGAAGTGGAGCAACGGATCATGTCATCGGGAATTATGCTTGTTTTGATTCTTGGGTTATATCTTATTGTTCGCGATACTCTTAACCTTGATTTTTTCAAGGAAATATTGTAA 1344 0.3824 MVIYLSPSPPSHSTSIIRLSNSKRPISDSSIKLKTHFSKSLLSPSFTSSNVKFTTKKHFLHDNKKRVDFRTCAIGGFDYGSFEGPQSVLEAAAVLTAIIVVHESGHFLAASLQGIHVSKFAVGFGPILAKFNSKNVEYSIRAFPLGGFVGFPDNDPDSDIPVDDVNLLKNRPILDRIIVVSAGVIANVIFALVIIFVQILAVGLPVQEIFPGVNVPEVRPFSAASRDGLLSGDVILEVNGNQFLKPGPNSVSEVVDVIKSNPKKYVLLKVKRGGEDFEIRVTPDENFDGTGKIGVQLAPNIKLSKVRPKNVVEAVTFTAKEFWGLSSNVFDGLKQTFLNFSQSASKVSGPVAIIAVGAEVARSNIDGLYQFAAILNINLAIINLLPLPALDGGTLALILVEAARGGRKLPLEVEQRIMSSGIMLVLILGLYLIVRDTLNLDFFKEIL* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1419 447 CDD S2P-M50_PDZ_RseP-like 88 439 - -
Tpr4g1419 447 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 24 447 IPR004387 GO:0004222|GO:0006508|GO:0016021
Tpr4g1419 447 PANTHER MEMBRANE METALLOPROTEASE ARASP2, CHLOROPLASTIC-RELATED 24 447 - -
Tpr4g1419 447 CDD PDZ_metalloprotease 200 283 - -
Tpr4g1419 447 Pfam PDZ domain 217 272 IPR041489 -
Tpr4g1419 447 TIGRFAM TIGR00054: RIP metalloprotease RseP 217 440 IPR004387 GO:0004222|GO:0006508|GO:0016021
Tpr4g1419 447 ProSiteProfiles PDZ domain profile. 202 273 IPR001478 GO:0005515
Tpr4g1419 447 Pfam Peptidase family M50 92 428 IPR008915 GO:0004222|GO:0006508
Tpr4g1419 447 Gene3D - 205 298 IPR036034 GO:0005515
Tpr4g1419 447 SUPERFAMILY PDZ domain-like 172 275 IPR036034 GO:0005515
Tpr4g1419 447 SMART pdz_new 200 274 IPR001478 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1419 - - lang:109351773 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1419 4 13842980 13844781 Tpr4g1419 4 13842980 13844781 ECH