Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1414 ATGAATAACGAACACAAAACGCGCGTGGCATTCACGATCGCCACCATAACAACAGCTGCCATAATCTCCATCATCTTCACCGTACGCCGCCGTACGCGGCGGAAGCAGCTCGAGTCCTCTTCGAATTCATGTTACTCACATTCCGAACAGAAGCCACAGTGTACGTTTAAGCGAGTTTTAGCTGATAACTCCTACACGCCATTCAAGCACTTGAGCTTCAACGCTTCCGGTAGTAATGATGAGAAAGGTTCAAATTTGCATCCTTTTGAGGCAGAGATTACGGCATTGTTAACAAATAATCATCAGCCTGAAATTGAACTTGGTGCTAAGAAATTAGAAATGAATGATTCGTATGTTTGGGTTGATACCGAGATGCAGTTAAAAGAACTGGTCGATGTATTGAGCAATGAAAGGTTCTTTGGTGTGGACACAGAACAACATAGCTTGCGCTCTTTTCTAGGCTTTACAGGATTAGTTCAGATTTCTACACAACAGGAAGATTATTTGATTGACACAATTGCTTTGCATGATTCTATGGAAATTCTTCGCCCAGTTTTTGCTAATCCTTCAATTTGTAAAGTATTTCATGGGGCCGACAATGATGTTCTCTGGCTACAGAGGGACTTCCATATATACATTGTTAATCTATTTGATACTTCAAAGGCATGTGAGGTGCTATCAAAACCACAGAAATCACTTGCTTATTTGCTAGAAACTTACTGTGGTGTGACAACAAATAAATTATTACAGCGTGAAGACTGGAGACAGCGCCCTCTCTCAGCAGAAATGGTGCAATATGCAAGGACAGATGCACACTATCTGTTGTATATTGCAAACTGTCTGATCATTGAACTCAAGCAACTAGACAACGAAAACACTTGTTCCGATGACAAATTCCATTTTGTTCTCGAGGCTAGTCGGCGTTCAAACATGATTTGTTTACAACTATTCACAAAGGAGATTGAAGCTTCGCCTGGAGAATCTGCTGCATTATCATTATATTCACGTCATCAGAGTAATCAAGGCTCTCCTTCAATTTCCGATGAAACTCAGTTTCTGTATACTGTGAGGCAGCTGTGCACATGGAGAGATTTAATGGCTCGTATTCATGACGAGAGTTTAAAATATGTACTGTCAGACCAGGCAATTGTTGCTTTGGCAAGTCAGCTTCCAGCAAGTCACTCTAAAATATACAATACCATAGTTCAAACCGATGTCAATGCAGAAACGGGTCTGACCTCTTTCATCCCTTCCCCATCTCCTGTTGTTTGTAGCCACTTGAGTGATATCTCTCAACTGCTTGCAAACGAGTTGGTTAAACATGGTGATATTTATTCAGTGATTCTTCAGAAGTGTTTAGGTCAAAAAGGAAGTTGTAAACTTAACATTTTCAATTATGCTTTGTTGGTTAACAGTAACCTGAGACCTACTTTATCCTATAAACACTCGAGCCTAAAAAATCCTAGACAGCATTCTCGGAAGGCTTCTCGAAATTTGTTTGTTAAAAAATTCTCTTGCAAATCACCGGTTTATCACAATTGTCGGATATTTGCTAATGACGGGAGACTGCTTTGTTATTGTGACCGGAAAAAGCTTGAATGGTACCTTAGTCGGGACCTTGCAAAACTTGTTGATGAGGAACCCCCAGCTATAATGCTTCTTTTTGAACCCAAAGGCCGCCCAGAGGATGAAGGAAATGATTTTTACATCCAGAGTAAAAAAAATATATGTGTTGGATGTGGTGAAGGAAATCACTACTTACGATATCGTATAATCCCATCATGTTACAGAATACATTTCCCTGAGCATTTGAAGAGTCATCGCTCTCATGATATTGTCCTACTTTGTGTGGATTGTCATGAAGCTGCCCATGCTGCTGCAGAGAAGTATAAGAGAAAAGTAGCTTCTGAATTTGGGATTCCACTCTATGTTCGTAGGGTAATTCATCCCGGGCAAGAGACTGAAAAACTGAACGATGAGGGAGGTGTATCTCCATTACAATTACGATCAGCTGCTCTGGCTCTTCTAAATCATGGACCAAGAATGCCTCTTAATCGGCGTGAAGAACTGACTGAGATTGTGAAGAGATATTATGGAGGAAGGGAGATATCTGAAGAAGATCTGGAAAGTGCTTTGCAAGTTGGCATGCGTCCTATTGAGAGAAGAAGATATGAGAAAAAGAGAGGGGTGTCATTTAAACATTCCACTGGAAATGCTGCTGCAGTGCCAGAGGGGGAAAATCATGCTGATTGTGCTCCTAGAGTGAGTAATGTCGACACGTTGAATGTTGATACTCTTAATGGTTCATATGCAAATGAAGAAACAAGAAGTGGAGATAATAGACAAGATGATTCGGGAGAACCCTCTTTGATTTCTGATCTTGCAGTTGATAAAGCTACTTCAAATGGAAATACCATCTTAATTAAAACTACAGATGATGATGAAGACGACCACGATGAAGCTGTAAATGTTGATGAGAGTCTGAATAGAAAACAACAAAATGTTGTTAGCGACTTATCTGATTCCAGAGACGAAGAATCTCTCAGAGATGAAGATTCAACACAAGCAAAACATCATTCGAAACTCTCACTTTTGGGACATGGTCCACATGGGAAACAAGTTGTAGATCATTTACTGAAGGAATATGGTGAAGATGGCGTTCGAGAGTTTTGTCAAAGATGGAGACAAGTATTTGTGGATGCTTTAAAACCGCGTTTTCTTCCTGGTGGATGGGATGTAAAACACAGCGGAAGAAGGGACTTTGGTGAGTTCAGTGTATACAATCATGAGAAAAGAGGGACTGCTGCTACTGTGGAGTGA 2820 0.4053 MNNEHKTRVAFTIATITTAAIISIIFTVRRRTRRKQLESSSNSCYSHSEQKPQCTFKRVLADNSYTPFKHLSFNASGSNDEKGSNLHPFEAEITALLTNNHQPEIELGAKKLEMNDSYVWVDTEMQLKELVDVLSNERFFGVDTEQHSLRSFLGFTGLVQISTQQEDYLIDTIALHDSMEILRPVFANPSICKVFHGADNDVLWLQRDFHIYIVNLFDTSKACEVLSKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSAEMVQYARTDAHYLLYIANCLIIELKQLDNENTCSDDKFHFVLEASRRSNMICLQLFTKEIEASPGESAALSLYSRHQSNQGSPSISDETQFLYTVRQLCTWRDLMARIHDESLKYVLSDQAIVALASQLPASHSKIYNTIVQTDVNAETGLTSFIPSPSPVVCSHLSDISQLLANELVKHGDIYSVILQKCLGQKGSCKLNIFNYALLVNSNLRPTLSYKHSSLKNPRQHSRKASRNLFVKKFSCKSPVYHNCRIFANDGRLLCYCDRKKLEWYLSRDLAKLVDEEPPAIMLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEAAHAAAEKYKRKVASEFGIPLYVRRVIHPGQETEKLNDEGGVSPLQLRSAALALLNHGPRMPLNRREELTEIVKRYYGGREISEEDLESALQVGMRPIERRRYEKKRGVSFKHSTGNAAAVPEGENHADCAPRVSNVDTLNVDTLNGSYANEETRSGDNRQDDSGEPSLISDLAVDKATSNGNTILIKTTDDDEDDHDEAVNVDESLNRKQQNVVSDLSDSRDEESLRDEDSTQAKHHSKLSLLGHGPHGKQVVDHLLKEYGEDGVREFCQRWRQVFVDALKPRFLPGGWDVKHSGRRDFGEFSVYNHEKRGTAATVE* 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1414 939 MobiDBLite consensus disorder prediction 808 868 - -
Tpr4g1414 939 Gene3D - 26 323 IPR036397 GO:0003676
Tpr4g1414 939 ProSiteProfiles HRDC domain profile. 349 433 IPR002121 GO:0003676
Tpr4g1414 939 SUPERFAMILY HRDC-like 351 403 IPR010997 GO:0000166|GO:0044237
Tpr4g1414 939 SMART 35exoneu6 118 286 IPR002562 GO:0003676|GO:0006139|GO:0008408
Tpr4g1414 939 SUPERFAMILY Ribonuclease H-like 51 288 IPR012337 -
Tpr4g1414 939 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 2 932 IPR045092 GO:0000175|GO:0000467
Tpr4g1414 939 CDD Rrp6p_like_exo 114 307 - -
Tpr4g1414 939 PANTHER PROTEIN RRP6-LIKE 3 2 932 - -
Tpr4g1414 939 Gene3D HRDC domain 343 442 IPR044876 -
Tpr4g1414 939 Pfam 3'-5' exonuclease 118 281 IPR002562 GO:0003676|GO:0006139|GO:0008408
Tpr4g1414 939 Pfam HRDC domain 356 395 IPR002121 GO:0003676
Tpr4g1414 939 MobiDBLite consensus disorder prediction 770 789 - -
Tpr4g1414 939 MobiDBLite consensus disorder prediction 837 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1414 Tpr-Chr4 13793127 13800736 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1414 K12951 - gmx:100791485 1369.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1414 4 13793127 13800736 Tpr4g1414 4 13793127 13800736 ECH