Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1381 ATGGCCACAAACATTCTTCTAAATTATGTTCCAGTTTATGTCATGCTCCCACTTGGAGTTATTAATGTTAACAATGTCTTTGAAGATCCAGATGGACTTAAGGAACAACTGGTGCAGCTACGAGCAGCAGGCGTCGACGGTGTCATGGTTGATGTCTGGTGGGGGATCATTGAACAGAAAGGACCTAAGGAGTATGATTGGAGTGCTTATAAGAGCTTGTTTCAGGTTGTTCAAGAATGTGGTTTGAAACTACAAGCTATAATGTCATTTCATCAATGTGGTGGAAATGTAGGGGATGTTGTTAACATCCCAATTCCACAGTGGGTTCTTGACATTGGAGAATCGGATCCGGATATCTTCTACACAAACCGTTCCGGAACTAGGGACAAGGAATATCTGAGTGTTGGTGTTGATAACAAACCTATCTTTCATGGAAGAACAGCCATTGAGATATACAGTGATTACATGAAGAGTTTCAGAGAAAACATGTCAGAATTTTTGAAGTCAGAGCTAATTATAGACATTGAAGTTGGCCTTGGCCCAGCAGGAGAACTCCGATACCCGTCTTATCCACAAAATCAAGGATGGGTATTTCCTGGAATCGGAGAGTTTCAGTGCTATGACAAATATTTGAAGGAAGATTTCAAAGCGGCTGCAGCGAGGGCTGGCCATCCTGAATGGGAACTACCGGATGACGCTGGCACGTACAATGACGTACCAGAATCTACTGAATTCTTCAAAACAAATGGAACATACCTCACTGAGAAAGGGAAATTCTTCTTAACTTGGTATTCTAACCAATTGCTGAATCACGGTGATCAAATCCTTGATGAAGCCAATAAAGCTTTCCTGGGCTGTAAAGTCAAATTAGCAATCAAAGTATCTGGAATTCACTGGTGGTACAAAGTTCCGAATCATGCTGCTGAACTTACTGCTGGATATTACAACCTTGATGATAGAGATGGATACCGTCCCATTGCAAAAGTGGTGTCTCGTCATCATGGCATTTTGAACTTTACATGTCTTGAGATGAGGAACTCAGAACAAAGCTCAGATGCACAAAGTGCACCGCAGGAACTTGTTCAGCAGGTATTGAGTGGAGGTTGGAGAGAAAACATTGAAGTTGCTGGAGAAAATGCACTTTCAAGGTATGATGCCACAGCTTATAACCAAATCATACTGAATGCAAGACCACAAGGTGTCAACAAAGACGGACCTCCAAAACTTCGGATGTATGGAGTAACATACCTTCGTCTATCAGATGAACTATTGGAGGAAACAAATTTTGATATATTCAAAAAATTTGTGGTAAAGATGCATGCAGATCAGAGTCACAGTGATGATCCTCAAGAGTACAATCATGCCATACCACCATTAAAGCGATCAGGACCAAATATTCCTGTTGATGATCTTCTTGAAGCAACTAAGCCAATACCGCCGTTCCCGTGGGATTCAGAAACAGATATGAAGGTTGATGGTTGA 1482 0.4157 MATNILLNYVPVYVMLPLGVINVNNVFEDPDGLKEQLVQLRAAGVDGVMVDVWWGIIEQKGPKEYDWSAYKSLFQVVQECGLKLQAIMSFHQCGGNVGDVVNIPIPQWVLDIGESDPDIFYTNRSGTRDKEYLSVGVDNKPIFHGRTAIEIYSDYMKSFRENMSEFLKSELIIDIEVGLGPAGELRYPSYPQNQGWVFPGIGEFQCYDKYLKEDFKAAAARAGHPEWELPDDAGTYNDVPESTEFFKTNGTYLTEKGKFFLTWYSNQLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVPNHAAELTAGYYNLDDRDGYRPIAKVVSRHHGILNFTCLEMRNSEQSSDAQSAPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKLRMYGVTYLRLSDELLEETNFDIFKKFVVKMHADQSHSDDPQEYNHAIPPLKRSGPNIPVDDLLEATKPIPPFPWDSETDMKVDG* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1381 493 ProSitePatterns Beta-amylase active site 1. 91 99 IPR018238 GO:0000272|GO:0016161
Tpr4g1381 493 MobiDBLite consensus disorder prediction 457 493 - -
Tpr4g1381 493 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 44 58 IPR001554 GO:0000272|GO:0016161
Tpr4g1381 493 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 65 83 IPR001554 GO:0000272|GO:0016161
Tpr4g1381 493 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 87 108 IPR001554 GO:0000272|GO:0016161
Tpr4g1381 493 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 180 202 IPR001554 GO:0000272|GO:0016161
Tpr4g1381 493 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 252 271 IPR001554 GO:0000272|GO:0016161
Tpr4g1381 493 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 288 304 IPR001554 GO:0000272|GO:0016161
Tpr4g1381 493 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 305 316 IPR001554 GO:0000272|GO:0016161
Tpr4g1381 493 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 323 346 IPR001554 GO:0000272|GO:0016161
Tpr4g1381 493 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 360 382 IPR001554 GO:0000272|GO:0016161
Tpr4g1381 493 SUPERFAMILY (Trans)glycosidases 7 488 IPR017853 -
Tpr4g1381 493 Pfam Glycosyl hydrolase family 14 13 435 IPR001554 GO:0000272|GO:0016161
Tpr4g1381 493 PRINTS Plant beta-amylase signature 170 179 IPR001371 GO:0000272|GO:0016161
Tpr4g1381 493 PRINTS Plant beta-amylase signature 326 336 IPR001371 GO:0000272|GO:0016161
Tpr4g1381 493 PRINTS Plant beta-amylase signature 368 377 IPR001371 GO:0000272|GO:0016161
Tpr4g1381 493 PRINTS Plant beta-amylase signature 382 391 IPR001371 GO:0000272|GO:0016161
Tpr4g1381 493 PRINTS Plant beta-amylase signature 397 413 IPR001371 GO:0000272|GO:0016161
Tpr4g1381 493 PRINTS Plant beta-amylase signature 415 429 IPR001371 GO:0000272|GO:0016161
Tpr4g1381 493 PRINTS Plant beta-amylase signature 430 444 IPR001371 GO:0000272|GO:0016161
Tpr4g1381 493 PANTHER - 3 488 IPR001554 GO:0000272|GO:0016161
Tpr4g1381 493 ProSitePatterns Beta-amylase active site 2. 180 190 IPR018238 GO:0000272|GO:0016161
Tpr4g1381 493 PANTHER BETA-AMYLASE 6 3 488 - -
Tpr4g1381 493 Gene3D Glycosidases 2 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1381 Tpr-Chr4 13365144 13373297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1381 5 491 Glycoside Hydrolase AT2G32290 67.828 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1381 K01177 - gmx:547931 886.33