Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1377 ATGGAAACAAGATCAGCAAAACGTAAGAAAATAGCTCAAATTTTACAAGAAAATGAAGCCAAATTGAAACTATCATCAATAGATAGAATCAGTGATTTACCTGATCATGTTATTCATCATATCCTTCTTTTACTTCCAATTAAATGTGTTGCACAAATGAGTGTTCTTTCTAAGAGATGGAAATTTCTTTGGATTACTTTTCCTGATCTTGATTTTACAACCCTTAATCCATTTCCACTTATTTCTACCAAAAATTATAAAAAAGTTTCCAAATTTGAAAAATTAAGATACCCTTTATCTTCACAAAATATGGATTTCATCACTCAAGTGCTTTCTATTCGCAACGCGAAGAATAAAGACATTAGGGCTCTTTGTTTTCGCGCTTGTTTGAGTTTTTCGCGTTTAAATAATTTAGTTCGTAATGCTATTAGGCATAATGTTAGAGAACTTGATATTGAAGTTGACACGGAAGTTGATACAGATGATTTTTTCAATTTTCCTAGATGTGTTATTAGTAGTGAATCTTTAAAAGTTTTGAAATTGAAATCGGGTTTTCGTTTACCTCCATCATCGATTATGAGAAACGGGTTTCAATCTTTGCATACATTGTCGTTATCATTAGTTATTTTGTATAATCAGCCTTCTCTATCCGATCTATTTTCTGAGTCGTCTTTTCCTCTTTTGAGAAATTTGCATCTTGATATGTGTTTCGGATTAATACATCTTCGTGTTGGTTGTCGCGCTCTCGAAGATTTGAACTTGGAAAGATGTTATCACTTACAAGGTTTGGATGTATGTGGTGCGAAAATTGAAAGAATGAGAGTAACAAGTTGTTTTGATGCATATTGTAACAAGACTTGGGTGAGAATGAATGTGCCAAAGCTCGAAAAATTGATTTGGAAATTTAATGCTGTGACTGATGTTACTGTTTTTGAGAATTCAAATTTGTTGCATGAGGCTTCCATTGGTTTCTTTATGTTGAAGGAAGGTAAAGTTAATATGGGTAGGCTTCAAAGTGCTAACGACTTCTTCTCTGGATTGTCTCATGTTCGATCCTTAGCTCTTGAAAGCCAGACTATCGAGATTCTATCAAAGTATAACATTATTATTCAGCCATTTTATAATCTTAAATCATTAGAGTTGCATACTGGTTTGAAGAAAAGAAATGTTCAAGCATTAGCATTCCTATTCAGATGCTCTCCTACCCTCCACACATTGATTCTGGAGATCATTAATGATTACAAGATTGAAAGAAAACAATGGAATAGGGACTTATGGAGCATAACTAGCACAGAAGAGGAGCAATATTGGGAATCACAAATTCCAAGTTTGAAATCTTTTCTACAACACTTAAAAGTGGTGAAAATTCAAGGCTTTCTTGATTGTGCAAATGAAGTTACATTAGCTAAGTTTCTTCTGAAGCATGGAAAAGCTTTGGAAGAAATGATAGTGTGCTCAGGGTATTCAAATAGAAGAGATTCTTTGAGGAGACAAAACATAAGGTCACAAATGATGGGATTTTCTTGGGCTTCTTCAAATGCTAAAGTGGAGTTTCAGTAG 1560 0.3359 METRSAKRKKIAQILQENEAKLKLSSIDRISDLPDHVIHHILLLLPIKCVAQMSVLSKRWKFLWITFPDLDFTTLNPFPLISTKNYKKVSKFEKLRYPLSSQNMDFITQVLSIRNAKNKDIRALCFRACLSFSRLNNLVRNAIRHNVRELDIEVDTEVDTDDFFNFPRCVISSESLKVLKLKSGFRLPPSSIMRNGFQSLHTLSLSLVILYNQPSLSDLFSESSFPLLRNLHLDMCFGLIHLRVGCRALEDLNLERCYHLQGLDVCGAKIERMRVTSCFDAYCNKTWVRMNVPKLEKLIWKFNAVTDVTVFENSNLLHEASIGFFMLKEGKVNMGRLQSANDFFSGLSHVRSLALESQTIEILSKYNIIIQPFYNLKSLELHTGLKKRNVQALAFLFRCSPTLHTLILEIINDYKIERKQWNRDLWSITSTEEEQYWESQIPSLKSFLQHLKVVKIQGFLDCANEVTLAKFLLKHGKALEEMIVCSGYSNRRDSLRRQNIRSQMMGFSWASSNAKVEFQ* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1377 519 Pfam FBD 445 483 IPR006566 -
Tpr4g1377 519 Gene3D - 9 66 - -
Tpr4g1377 519 SUPERFAMILY F-box domain 24 81 IPR036047 GO:0005515
Tpr4g1377 519 SMART 9598neu4hmm 445 519 IPR006566 -
Tpr4g1377 519 Pfam F-box domain 30 63 IPR001810 GO:0005515
Tpr4g1377 519 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 24 464 - -
Tpr4g1377 519 SUPERFAMILY RNI-like 117 309 - -
Tpr4g1377 519 PANTHER F-BOX PROTEIN-LIKE 24 464 - -
Tpr4g1377 519 ProSiteProfiles F-box domain profile. 27 75 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1377 Tpr-Chr4 13310131 13312621 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g1377 26 424 EF-hand Containing Proteins AT5G41840 23.490 7.92e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1377 - - ahf:114927451 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g1377 4 13310131 13312621 Tpr4g1377 4 13310131 13312621 ECH