Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1371 ATGTTTAAATTTTCTTGTTTTCATGTTAATGTCCAAGGCAACAAAACAAAGAAAATAGCTCAACCTTCTTCTGAAGAAATGTCGAAAGCTTTGCGTGATAGTTCCAAAAAGCTAGTTAGTAAAGATTTGTCTACCCCTACGAGCTTAAATTCGTCACCTTCAAAACAACATTCACATAAGCTAATGAATGTTTCCGAGAATGATATTCTTGACCAGGATTCAGTAGAGCGCATTGGTAGGTTAGAGGATATGAATAGCAAGTTTCTCACTGAACTTGACAGAAAAGTCCACCAAATTGGGCGTCTCAGGAAAAGTCAGTCGGATAGTGAGCTTTGCCAAGGGATAACTGAGGGTGATCATGATGATATGGGGTTTTCCAAGAGCCACCATGACTCACCAAATTCAATAGGCAGCCCTAATGATCAATCTAAAACGGATTCGAACTTTGAGTTTCAAGTCATTCCTGGCCGTTGCAATGATAGCTCACTTTTTTCAATAGGAGATCTGACGCCTTCGGAGAAAGATGCTCGTGAAATTTCTGATACTCCATTATCCGTCGATCATGCCGGTGACTCTGCTGGCCGGAATTCTGGTCCCAATACACCATCTTTAAGGAAGTCGTGTTCCTTGCCCAATATCGTTGCTTCTATGCTTACTTCTGGAAATAAACATGATTTTAAACATGCATCAGCATTGTCAAGATCTTCTGATGATCTTTGCGCTTTAAGCTTGAGGAAGAAAGAGGTATTCATCAACGAGTCTTATGATCAAATTAGGGAAACTCAAGAAAGTATCATGGAAAAAACTGAAGATAATCATATGGACAGATACTTTGACGATGGTTTTGATTCGCATCTTCTTTCTGGTGTACCAAAAGACTGGACAAGACCGATTACAGACGATATAAGTGATGCAGAACCTCTTCAAGGAGATTCCTCGATTGAATCTCCTAACATGAATTTTAGCTTTAAGCGGATTGAGGATTGGGTAAGCAGTTTGCAGGACTGCGAACCACCTCCAGAGGATATAATTGAATTGCCTGAATCTGTTGTTGATCCAGTAGTTGATGTTAACACCGCAAATGCTGTGGCTGCTTCAGTTGTGGATCATAAGATCACTCCGGGAATGGAAGCCGCTAAAAGATATATATCTTCATTGACTGCCAATGCCACTACGGCTCAGCTGGCAAATCATGGGCTGGTTGTGATCCCCTTTTTGAGTGCATTTGTGAGTTTGAAGGTGCTCAATTTGTCTGGAAATGCAATTGCAAGAATAACTGCCGGTACTCTTCCTCGAGGACTTCACACATTGAATTTGTCAAAAAACAATATTTCCACTATAGAGGGATTACGTGAACTTACACGGCTTCGTGTCCTGGACCTCAGCTACAACCGTATACTAAGAATTGGACACGGTTTGGCATCATGTTCTTCTCTAAAGGAGCTGTACCTTGCTGGAAACAAGATCGGTGAAGTGGAGGGTCTGCACCGCCTGTTGAAACTAAGTATCTTGGATCTTCGTTTTAACAAGATTTCAACTGCTAAATGTCTTGGACAACTTGCAGCCAACTACAATTCTTTGCTAGCTATCAACTTGGAAGGTAACCCTTGCCAGAAAAACGTCGGAGATGAACAAATTAAGAAATATCTGCAAGGCCTACTTCCCCATCTTGTCTACTACAATCGGCAGCCGTTCAAAGCAAACGGTTTGAAGGACGGTGCAGATCGTGCAGTTCGATTAGGAATGAATTCACAACAGTTTGATCGCAGTCTTAGAGTGGATCGCAAGTCTTCAAGGAAGGGGTCATCATCTTCTCGGAGGCCATCATCTACGTCCTCACCAAAAGTGTCCACGCCAAAAGCGTCCAAAGGAAAACAAGCCCACCTCCCACCTATCAGAACCAAACCATCAATCCAAACTCGCTCTCATTTTAACTCACCCAACAAATTGAATTCGGACAACTTCATGCGCAAAAGTCACAGCGAGGGCACTCTTCTTGGAGCTTTGTAA 2010 0.4224 MFKFSCFHVNVQGNKTKKIAQPSSEEMSKALRDSSKKLVSKDLSTPTSLNSSPSKQHSHKLMNVSENDILDQDSVERIGRLEDMNSKFLTELDRKVHQIGRLRKSQSDSELCQGITEGDHDDMGFSKSHHDSPNSIGSPNDQSKTDSNFEFQVIPGRCNDSSLFSIGDLTPSEKDAREISDTPLSVDHAGDSAGRNSGPNTPSLRKSCSLPNIVASMLTSGNKHDFKHASALSRSSDDLCALSLRKKEVFINESYDQIRETQESIMEKTEDNHMDRYFDDGFDSHLLSGVPKDWTRPITDDISDAEPLQGDSSIESPNMNFSFKRIEDWVSSLQDCEPPPEDIIELPESVVDPVVDVNTANAVAASVVDHKITPGMEAAKRYISSLTANATTAQLANHGLVVIPFLSAFVSLKVLNLSGNAIARITAGTLPRGLHTLNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKIGEVEGLHRLLKLSILDLRFNKISTAKCLGQLAANYNSLLAINLEGNPCQKNVGDEQIKKYLQGLLPHLVYYNRQPFKANGLKDGADRAVRLGMNSQQFDRSLRVDRKSSRKGSSSSRRPSSTSSPKVSTPKASKGKQAHLPPIRTKPSIQTRSHFNSPNKLNSDNFMRKSHSEGTLLGAL* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1371 669 SUPERFAMILY Outer arm dynein light chain 1 400 563 - -
Tpr4g1371 669 MobiDBLite consensus disorder prediction 119 144 - -
Tpr4g1371 669 PANTHER BNAA09G01440D PROTEIN 142 665 - -
Tpr4g1371 669 MobiDBLite consensus disorder prediction 129 144 - -
Tpr4g1371 669 MobiDBLite consensus disorder prediction 633 659 - -
Tpr4g1371 669 SMART LRR_typ_2 409 432 IPR003591 -
Tpr4g1371 669 SMART LRR_typ_2 453 476 IPR003591 -
Tpr4g1371 669 SMART LRR_typ_2 498 520 IPR003591 -
Tpr4g1371 669 MobiDBLite consensus disorder prediction 603 620 - -
Tpr4g1371 669 ProSiteProfiles Leucine-rich repeat profile. 478 499 IPR001611 GO:0005515
Tpr4g1371 669 PANTHER NISCHARIN RELATED 142 665 - -
Tpr4g1371 669 MobiDBLite consensus disorder prediction 183 206 - -
Tpr4g1371 669 SMART LRR_sd22_2 431 452 - -
Tpr4g1371 669 SMART LRR_sd22_2 453 475 - -
Tpr4g1371 669 SMART LRR_sd22_2 498 522 - -
Tpr4g1371 669 SMART LRR_sd22_2 476 497 - -
Tpr4g1371 669 Gene3D Ribonuclease Inhibitor 360 550 IPR032675 -
Tpr4g1371 669 Pfam Leucine-rich repeat 414 512 - -
Tpr4g1371 669 MobiDBLite consensus disorder prediction 19 68 - -
Tpr4g1371 669 MobiDBLite consensus disorder prediction 585 669 - -
Tpr4g1371 669 MobiDBLite consensus disorder prediction 40 60 - -
Tpr4g1371 669 ProSiteProfiles Leucine-rich repeat profile. 455 477 IPR001611 GO:0005515
Tpr4g1371 669 ProSiteProfiles Leucine-rich repeat profile. 433 454 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1371 Tpr-Chr4 13246424 13250151 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1371 - - lang:109355198 741.495